BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0566800 Os02g0566800|J090015B12
(46 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77810.1 | chr1:29260899-29263001 REVERSE LENGTH=394 81 1e-16
AT1G22015.1 | chr1:7751225-7753425 REVERSE LENGTH=399 77 1e-15
AT1G33430.2 | chr1:12124438-12126052 REVERSE LENGTH=404 73 3e-14
AT1G32930.1 | chr1:11931980-11934399 REVERSE LENGTH=400 73 4e-14
AT1G05170.2 | chr1:1491460-1493931 REVERSE LENGTH=408 72 6e-14
AT2G32430.1 | chr2:13771626-13774102 FORWARD LENGTH=410 71 9e-14
AT4G26940.1 | chr4:13529911-13532387 REVERSE LENGTH=408 65 1e-11
AT1G11730.1 | chr1:3957473-3960113 FORWARD LENGTH=385 64 2e-11
AT5G53340.1 | chr5:21641045-21643195 REVERSE LENGTH=339 55 1e-08
>AT1G77810.1 | chr1:29260899-29263001 REVERSE LENGTH=394
Length = 393
Score = 80.9 bits (198), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/37 (86%), Positives = 35/37 (94%)
Query: 4 RPILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTPP 40
+PILHK+ANEDVSLGSWFIGLEV HID+RN CCGTPP
Sbjct: 308 QPILHKYANEDVSLGSWFIGLEVEHIDDRNFCCGTPP 344
>AT1G22015.1 | chr1:7751225-7753425 REVERSE LENGTH=399
Length = 398
Score = 77.4 bits (189), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 4 RPILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTPP 40
+PILHK+ANEDV+LGSWFIGLEV ID+RN CCGTPP
Sbjct: 310 QPILHKYANEDVTLGSWFIGLEVEQIDDRNFCCGTPP 346
>AT1G33430.2 | chr1:12124438-12126052 REVERSE LENGTH=404
Length = 403
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 6 ILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTPP 40
ILH++ANEDVSLG+W +GLEV H+DER+MCCGTPP
Sbjct: 318 ILHRYANEDVSLGAWMLGLEVEHVDERSMCCGTPP 352
>AT1G32930.1 | chr1:11931980-11934399 REVERSE LENGTH=400
Length = 399
Score = 72.8 bits (177), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/36 (77%), Positives = 34/36 (94%)
Query: 4 RPILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTP 39
R +LHK+ANEDVSLGSWFIGL+V HID+R++CCGTP
Sbjct: 314 RQLLHKYANEDVSLGSWFIGLDVEHIDDRSLCCGTP 349
>AT1G05170.2 | chr1:1491460-1493931 REVERSE LENGTH=408
Length = 407
Score = 72.0 bits (175), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 6 ILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTPP 40
+LHK+ANEDVSLG+WFIG++V HID+R +CCGTPP
Sbjct: 324 VLHKYANEDVSLGAWFIGIDVKHIDDRRLCCGTPP 358
>AT2G32430.1 | chr2:13771626-13774102 FORWARD LENGTH=410
Length = 409
Score = 71.2 bits (173), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 6 ILHKFANEDVSLGSWFIGLEVNHIDERNMCCGTPP 40
+LHK+ANEDV+LG+WFIGL+V HID+R +CCGTPP
Sbjct: 326 VLHKYANEDVTLGAWFIGLDVTHIDDRRLCCGTPP 360
>AT4G26940.1 | chr4:13529911-13532387 REVERSE LENGTH=408
Length = 407
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 6 ILHKFANEDVSLGSWFIGLEVNHIDERNMCCGT 38
+LHK+ NEDVSLGSWF+GL+V H+D+R +CCGT
Sbjct: 325 VLHKYVNEDVSLGSWFLGLDVEHVDDRRLCCGT 357
>AT1G11730.1 | chr1:3957473-3960113 FORWARD LENGTH=385
Length = 384
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 6 ILHKFANEDVSLGSWFIGLEVNHIDERNMCCGT 38
+LHK+ANEDVSLGSWFIGL V H+DE+ +CC T
Sbjct: 301 LLHKYANEDVSLGSWFIGLNVEHVDEKRLCCST 333
>AT5G53340.1 | chr5:21641045-21643195 REVERSE LENGTH=339
Length = 338
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 4 RPILHKFANEDVSLGSWFIGLEVNHIDERNMCC 36
R ILH +A++DVS GSWF+GL+V H+DE CC
Sbjct: 294 RDILHSYAHDDVSTGSWFVGLDVKHVDEGKFCC 326
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.145 0.507
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,235,358
Number of extensions: 33683
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 9
Length of query: 46
Length of database: 11,106,569
Length adjustment: 20
Effective length of query: 26
Effective length of database: 10,558,249
Effective search space: 274514474
Effective search space used: 274514474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)