BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0564300 Os02g0564300|J080022K01
(630 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37920.1 | chr2:15869269-15870024 REVERSE LENGTH=252 181 1e-45
AT2G07750.1 | chr2:3576483-3580396 FORWARD LENGTH=846 86 9e-17
AT1G63250.1 | chr1:23463284-23466451 REVERSE LENGTH=799 83 6e-16
>AT2G37920.1 | chr2:15869269-15870024 REVERSE LENGTH=252
Length = 251
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 114/174 (65%), Gaps = 12/174 (6%)
Query: 43 RGDLAIRMGGGPRTFPGGVSKWQWKRMQARKAKQLLKARLARERQLYEMRKRAELRDAAA 102
R IRMGGGPRTFPGGVSKWQWKRMQA+K KQLLKARL RERQ+YEMRKRAEL+ A A
Sbjct: 43 RKSTVIRMGGGPRTFPGGVSKWQWKRMQAKKQKQLLKARLCRERQIYEMRKRAELKAAVA 102
Query: 103 HLERPWXXXXXXXXXXXXXXXXXXXXXXXDQMKALADRFHRPGGVDLWNDRDGPRVFAAP 162
LERPW +Q+K LADRF +PGG DLW DRDGP++F +
Sbjct: 103 ELERPW--------EPIHKPPNLFSVCADEQVKVLADRFQKPGGFDLWTDRDGPQLFESV 154
Query: 163 DTGRASARFFPKGSVHSVQPYGLVNGGLESTLAARGNPSDATDRSHRHRLQGVR 216
D SARFFPKG VHSV+PYG ++ S++ G+ S+ D +L+G R
Sbjct: 155 DD-LPSARFFPKGVVHSVKPYGRLSS---SSVVDDGDESEVKDEEIGKKLRGRR 204
>AT2G07750.1 | chr2:3576483-3580396 FORWARD LENGTH=846
Length = 845
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 50 MGGGPRTFPGGVSKWQWKRMQARKAKQLLKARLARERQLYEMRKRAELRDAAAHLERPWX 109
MGGGPRTFPGG++KWQWKRM +KA++ L +E+QLYE R R E+R + W
Sbjct: 76 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIR------AKMWG 129
Query: 110 XXXXXXXXXXXXXXXXXXXXXXDQMKALADRFHRPGGVDLWNDRDGP 156
+ +K LADRF + G DLWND DGP
Sbjct: 130 HPDSGEKTAKLKQSHGPMSPK-EHIKTLADRFMKAGADDLWNDNDGP 175
>AT1G63250.1 | chr1:23463284-23466451 REVERSE LENGTH=799
Length = 798
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 50 MGGGPRTFPGGVSKWQWKRMQARKAKQLLKARLARERQLYEMRKRAELRDAAAHLERPWX 109
MGGGPRTFPGG++KWQWKRM +KA++ L +E+QLYE R R E+R + W
Sbjct: 26 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIR------AKMWG 79
Query: 110 XXXXXXXXXXXXXXXXXXXXXXDQMKALADRFHRPGGVDLWNDRDGP 156
+ +K LADRF + G D WN+ DGP
Sbjct: 80 NPDSGEKTAKSKQSHGPMSPK-EHIKTLADRFMKAGAEDFWNENDGP 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,487,696
Number of extensions: 612829
Number of successful extensions: 1138
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 3
Length of query: 630
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 525
Effective length of database: 8,227,889
Effective search space: 4319641725
Effective search space used: 4319641725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)