BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0564200 Os02g0564200|AK059007
         (66 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14450.1  | chr1:4947337-4947558 REVERSE LENGTH=74              94   1e-20
AT2G02510.1  | chr2:673338-673556 FORWARD LENGTH=73                88   7e-19

>AT1G14450.1 | chr1:4947337-4947558 REVERSE LENGTH=74
          Length = 73

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 47/64 (73%)

Query: 3  GKGLNATGEFFRRRDDWRRHPMVGNQLRHATPGLGIAIVAFGIYLVGEAAYNRLYRPSGD 62
           K L  TGEFFRRRD+WR+HPM+ NQ+RHA PGLGI + AF +YLVGE  YN+   PS  
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKS 61

Query: 63 HHHH 66
           HHH
Sbjct: 62 SHHH 65



>AT2G02510.1 | chr2:673338-673556 FORWARD LENGTH=73
          Length = 72

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%)

Query: 3  GKGLNATGEFFRRRDDWRRHPMVGNQLRHATPGLGIAIVAFGIYLVGEAAYNRLYRPSGD 62
           K L  TGEFFRRRD+WR+HPM+ NQ+RHA PG+GI + AF +YLVGE  Y++L  PS  
Sbjct: 2  AKPLGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQ 61

Query: 63 HHHH 66
            H 
Sbjct: 62 SSHQ 65



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.143    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,560,564
Number of extensions: 49608
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 66
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 27
Effective length of database: 10,037,345
Effective search space: 271008315
Effective search space used: 271008315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)