BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0550100 Os02g0550100|AK099459
(167 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166 224 1e-59
AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165 223 3e-59
AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165 223 3e-59
AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165 223 3e-59
AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201 203 4e-53
AT2G25610.1 | chr2:10901585-10902494 REVERSE LENGTH=179 56 7e-09
>AT1G19910.1 | chr1:6913317-6914322 FORWARD LENGTH=166
Length = 165
Score = 224 bits (572), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 123/164 (75%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
ASTFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 2 ASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVIISTGINPKAK Y+LFDGYAH MAIGIVGDAGV
Sbjct: 62 AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
Query: 124 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
RANAQQPKLFVGM YGLIVGIILSSRAGQSRA+
Sbjct: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
>AT4G34720.1 | chr4:16568223-16569165 REVERSE LENGTH=165
Length = 164
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 122/163 (74%)
Query: 5 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 64
STFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 65 GVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGVR 124
GVLGIYGLIIAVIISTGINPKAK Y+LFDGYAH MAIGIVGDAGVR
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 125 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
ANAQQPKLFVGM YGLIVGIILSSRAGQSRA+
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT4G38920.1 | chr4:18147330-18148853 FORWARD LENGTH=165
Length = 164
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 122/163 (74%)
Query: 5 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 64
STFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 65 GVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGVR 124
GVLGIYGLIIAVIISTGINPKAK Y+LFDGYAH MAIGIVGDAGVR
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 125 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
ANAQQPKLFVGM YGLIVGIILSSRAGQSRA+
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT2G16510.1 | chr2:7160007-7160811 REVERSE LENGTH=165
Length = 164
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 122/163 (74%)
Query: 5 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 64
STFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61
Query: 65 GVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGVR 124
GVLGIYGLIIAVIISTGINPKAK Y+LFDGYAH MAIGIVGDAGVR
Sbjct: 62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121
Query: 125 ANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
ANAQQPKLFVGM YGLIVGIILSSRAGQSRA+
Sbjct: 122 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
>AT1G75630.2 | chr1:28400662-28402032 FORWARD LENGTH=201
Length = 200
Score = 203 bits (516), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/198 (60%), Positives = 122/198 (61%), Gaps = 34/198 (17%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
+S FSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3 SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVIISTGINPKAK Y+LFDGYAH MAIGIVGDAGV
Sbjct: 63 AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 122
Query: 124 R----------------------------------ANAQQPKLFVGMXXXXXXXXXXXXY 149
R ANAQQPKLFVGM Y
Sbjct: 123 RVVDCNPDSKIKIYSFTTSFLSNLSQKELFIDLLSANAQQPKLFVGMILILIFAEALALY 182
Query: 150 GLIVGIILSSRAGQSRAD 167
GLIVGIILSSRAGQSRA+
Sbjct: 183 GLIVGIILSSRAGQSRAE 200
>AT2G25610.1 | chr2:10901585-10902494 REVERSE LENGTH=179
Length = 178
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 28 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PK 85
S +GAA+G +G + + P + K+++ V+ + IYG+I+A+I+ T + P
Sbjct: 35 SVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPS 94
Query: 86 AKPY---FLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXX 142
+K Y L GYA + +GI+G + ++AQ LFV +
Sbjct: 95 SKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIF 154
Query: 143 XXXXXXYGLIVGIILSSRA 161
+G+IVGII+S++A
Sbjct: 155 GSALGLFGVIVGIIMSAQA 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,328,034
Number of extensions: 68365
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)