BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0542400 Os02g0542400|AK065397
(410 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21200.1 | chr1:7421483-7422814 FORWARD LENGTH=444 207 8e-54
AT1G76870.1 | chr1:28857250-28858407 FORWARD LENGTH=386 201 6e-52
AT3G10040.1 | chr3:3096580-3097875 REVERSE LENGTH=432 146 2e-35
>AT1G21200.1 | chr1:7421483-7422814 FORWARD LENGTH=444
Length = 443
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 27/310 (8%)
Query: 89 ASQWHRVKWISGMVKLLVSAVAYIDEDVDMDYGTGSAARRKHAMLKRKGKWRLVSAAMTE 148
S W RVKW MVKLL++AV+YI +D S++RRK A+L++KGKW+ VS M E
Sbjct: 111 GSPWQRVKWTDKMVKLLITAVSYIGDDSS----IDSSSRRKFAVLQKKGKWKSVSKVMAE 166
Query: 149 RGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPELLEGM-RLSGKLKEEARKH 207
RG+ VSPQQCEDKFNDLNKRYK++ ++LGRGT+CQVVE+P LL+ + L+ K K++ RK
Sbjct: 167 RGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKI 226
Query: 208 LNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLRLALRSGEEHAKKNPFGYXXXXXXXXXX 267
++SKHL YEEMCSYHN N++ L D ALQ+SL+LALRS ++H + +
Sbjct: 227 MSSKHLFYEEMCSYHNGNRLHLPHDLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDH 286
Query: 268 XXXXXXXLEVSAEDH--------HHGIHGAKRLKHDQEETH-FGSNLSEVAVIDMNKM-- 316
E + + H+G G K +H G + S V ++ NK+
Sbjct: 287 DGDGDEHDEYEEQHYAYGDCRVNHYGGGGGPLKKIRPSLSHEDGDHPSHVNSLECNKVSL 346
Query: 317 ----LSEG---SGGPTAEKSPSTPGM----RDIRLEKRRLKIKAQMLKIEQKHFKWLRFS 365
S+ GG + ++ S R ++LE+++L+I+ ++L++E++ F+W RFS
Sbjct: 347 PQIPFSQADVNQGGAESGRAGSVQKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFS 406
Query: 366 KEKDRELEKM 375
K++D+ELE+M
Sbjct: 407 KKRDQELERM 416
>AT1G76870.1 | chr1:28857250-28858407 FORWARD LENGTH=386
Length = 385
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 196/365 (53%), Gaps = 27/365 (7%)
Query: 22 FDLE-ATMQPPPPFHFAQDPHLHHHQGMVPVRGNPMLDL--GNVVKTSPSDEEDVDDXXX 78
FD + ++M+ P Q+ HH N +D NV + S ED +
Sbjct: 10 FDSQVSSMRDLRPNAINQNQKQHHPNSRQDSGFNNTMDTRHNNVDRGKKSMSEDDELCLL 69
Query: 79 XXXXXXXXKEASQWHRVKWISGMVKLLVSAVAYIDEDVDMDYGTGSAARRKHAMLKRKGK 138
KE S W RVKW+ MVKL+++A++YI ED S + +K A+L++KGK
Sbjct: 70 SSDGQNKSKENSPWQRVKWMDKMVKLMITALSYIGED--------SGSDKKFAVLQKKGK 121
Query: 139 WRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPELLEGM-RLS 197
WR VS M ERG+ VSPQQCEDKFNDLNKRYK++ E+LGRGT+C+VVE+P LL+ + L+
Sbjct: 122 WRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVENPSLLDKIDYLN 181
Query: 198 GKLKEEARKHLNSKHLHYEEMCSYHNRNKMCLFDDPALQKSLRLALRSGEEHAKKNPFGY 257
K K+E R+ ++SKHL YEEMCSYHN N++ L DPA+Q+SL L + + G
Sbjct: 182 EKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLITLGSRDDHDNDEHGK 241
Query: 258 XXXXXXXXXXXXXXXXXLEVSAEDHHHGIHGAKRLKHDQEETHFG--SNLSEVAVI---- 311
+S KRL+ Q G + +V +
Sbjct: 242 HQNEDLDDDDDYEEDHDGALSD-------RPLKRLRQSQSHEDVGHPNKGYDVPCLPRSQ 294
Query: 312 -DMNKMLSEGSGGPTAEKSPSTPGMRDIRLEKRRLKIKAQMLKIEQKHFKWLRFSKEKDR 370
D+N+ +S S + + + LE R+L+I+A+M+++E++ FKW FSK +++
Sbjct: 295 ADVNRGISLDSRKAAGLQRQQIES-KSLELEGRKLQIQAEMMELERQQFKWEVFSKRREQ 353
Query: 371 ELEKM 375
+L KM
Sbjct: 354 KLAKM 358
>AT3G10040.1 | chr3:3096580-3097875 REVERSE LENGTH=432
Length = 431
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 24/215 (11%)
Query: 22 FDLEATMQPPPPFHFAQDPHLHHHQGMVPVRGNPMLD----LGNVVKTSPSDEEDVDDXX 77
+ Q PP + P+ + M P+ G D G+ +P D D
Sbjct: 38 YTTSGDQQTQPPIK-SLYPYASKPKQMSPISGGGCDDEDRGSGSGSGCNPEDSAGTDGK- 95
Query: 78 XXXXXXXXXKEASQWHRVKWISGMVKLLVSAVAYIDEDVDMD--------YGTGSAARRK 129
++ SQWHR+KW MV+LL+ AV YI ++ ++ G G
Sbjct: 96 ---------RKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVDAKKKTGGGGGGGGG 146
Query: 130 HAMLKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTACQVVEHPE 189
ML++KGKW+ VS AM E+GF VSPQQCEDKFNDLNKRYKR+ +ILG+G AC+VVE+
Sbjct: 147 GGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGIACRVVENQG 206
Query: 190 LLEGM-RLSGKLKEEARKHLNSKHLHYEEMCSYHN 223
LLE M L+ KLK+E +K LNSKHL + EMC+YHN
Sbjct: 207 LLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHN 241
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,315,073
Number of extensions: 340379
Number of successful extensions: 1011
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 4
Length of query: 410
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,337,553
Effective search space: 2576303877
Effective search space used: 2576303877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)