BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0536100 Os02g0536100|AK107922
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44280.1  | chr3:15968760-15970532 REVERSE LENGTH=109           62   7e-11
AT5G06265.1  | chr5:1906596-1907382 FORWARD LENGTH=107             54   2e-08

>AT3G44280.1 | chr3:15968760-15970532 REVERSE LENGTH=109
          Length = 108

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 5/92 (5%)

Query: 18  TSQLEWKQQLVNELESTSHKQKHIS---SRGELVKEKIILSQEKMIRLLNEHIQNLQQQL 74
           TSQ EW+Q LV EL++ +   +       R E VKEKII+SQE+ I+ LNE +++LQ QL
Sbjct: 17  TSQFEWRQPLV-ELDTATSSSQKQQQISDREEAVKEKIIISQERHIQRLNELVRSLQLQL 75

Query: 75  LQCRVNNRTANSSGSS-LTSYIGEIQRQQMMD 105
           LQC+  N T N++ S  +     E++R+Q+++
Sbjct: 76  LQCKGENETQNATKSYHINKQFIEVERKQILE 107



>AT5G06265.1 | chr5:1906596-1907382 FORWARD LENGTH=107
          Length = 106

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 2  MSRSAXXXXXXXXXXXTSQLEWKQQLVNELESTSH-------KQKHISSRGELVKEKIIL 54
          M+RS            TSQ EW +Q+ NE E++S        +Q+HI    E V+ K IL
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 55 SQEKMIRLLNEHIQNLQQQLLQCRVNNRT 83
           QEK I+ LNE +++L++QLLQCR  N+ 
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNENQV 89



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.122    0.317 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,643,096
Number of extensions: 50750
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)