BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0535700 Os02g0535700|AK073473
         (160 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22350.1  | chr5:7397762-7400746 REVERSE LENGTH=428            239   5e-64
AT5G06180.1  | chr5:1873197-1875352 FORWARD LENGTH=405            221   1e-58

>AT5G22350.1 | chr5:7397762-7400746 REVERSE LENGTH=428
          Length = 427

 Score =  239 bits (610), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 129/157 (82%)

Query: 3   NCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGEEP 62
           NC+YG DLA+QL  S  NVL +CGSVR++ S +TP KVS +I KE   +PK+YIW+G+EP
Sbjct: 269 NCRYGADLAKQLTDSLLNVLATCGSVRITLSYKTPAKVSRVIFKELGDNPKVYIWNGQEP 328

Query: 63  NPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVVRP 122
           NP+MGHLAW DAFVVTADS+S++SEACSTGKPVYV+G ++CKWK + F K+LRERGVVR 
Sbjct: 329 NPYMGHLAWGDAFVVTADSVSLISEACSTGKPVYVVGADHCKWKIAEFQKSLRERGVVRS 388

Query: 123 FTGLEDISNSWSYPPLNDAIEVATRVREAIAERGWSV 159
           FTG ED+S SWSYPPLND  E ATR+R  +A RGWS+
Sbjct: 389 FTGFEDMSESWSYPPLNDTAEAATRIRRELAARGWSL 425



>AT5G06180.1 | chr5:1873197-1875352 FORWARD LENGTH=405
          Length = 404

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 123/157 (78%)

Query: 3   NCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGEEP 62
           NC YGVDLA+QL     ++L SCGS+R+SFSRRTP+KV ++I+ E + + K+YIWDG++P
Sbjct: 246 NCLYGVDLAKQLCGMLQSILWSCGSLRISFSRRTPKKVVEVITGELSSNSKVYIWDGKDP 305

Query: 63  NPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVVRP 122
           NPH+GHLA A+ F++TADSISMLSEACSTGKPVYV+G E C WKFS F KTL  RG VRP
Sbjct: 306 NPHLGHLALANTFIITADSISMLSEACSTGKPVYVVGAERCTWKFSDFQKTLHGRGAVRP 365

Query: 123 FTGLEDISNSWSYPPLNDAIEVATRVREAIAERGWSV 159
            TG ED+   WSY PLND +E A RV + +A+RGW +
Sbjct: 366 LTGKEDMCEKWSYSPLNDNVEAARRVIQDLAKRGWEI 402



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,642,802
Number of extensions: 138893
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)