BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0527200 Os02g0527200|AK058851
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27830.1 | chr2:11860734-11861306 FORWARD LENGTH=191 105 1e-23
AT4G22758.1 | chr4:11958477-11959904 FORWARD LENGTH=256 62 3e-10
AT1G70780.1 | chr1:26695462-26695975 REVERSE LENGTH=141 50 9e-07
>AT2G27830.1 | chr2:11860734-11861306 FORWARD LENGTH=191
Length = 190
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 19 QRSASFHGRGEAEQRHSLLKQRPRTQPDLLAGLRGQSFXXXXXXXXXXXXXXXVLLTVAV 78
+++ SFHGRG + +RP+T P+L + GQS +LL V V
Sbjct: 22 EKAMSFHGRGTTPLSNPGELRRPKTLPELFS--TGQSITVPETVSLPPRLTK-LLLNVTV 78
Query: 79 RQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADPAAFGLHFSQFSLQSLNPE 138
+ S+ + ++ E +V+DL+ AAV Y++E RRP LP ++P+ F LH+SQFSL+S+ +
Sbjct: 79 QGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQFSLESIVRD 138
Query: 139 EKLMELGSRSFFLCPKXXXXXXXXXSSGEDTGGLSGEDEANSAKKPSVLA-PWLGFLHF 196
EKL+ LGSR+FFLC + + G GLS E + A+K + WL F+ F
Sbjct: 139 EKLISLGSRNFFLCGR-------KETGGFIGCGLSSESCSKEAEKVAKTGFHWLKFMGF 190
>AT4G22758.1 | chr4:11958477-11959904 FORWARD LENGTH=256
Length = 255
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 72 VLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADPAAFGLHFSQFS 131
V+++VAV S P+ M + +V + + V+ Y +EGR P L +AF LH S FS
Sbjct: 124 VIISVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKL--DRDSAFELHQSHFS 181
Query: 132 LQSLNPEEKLMELGSRSFFL 151
+Q L E + ELGSRSF++
Sbjct: 182 IQCLEKREIIGELGSRSFYM 201
>AT1G70780.1 | chr1:26695462-26695975 REVERSE LENGTH=141
Length = 140
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 72 VLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADPAAFGLHFSQFS 131
+L++V V S P+ +A + VA ++ A++ Y REGR PLL S D F L+
Sbjct: 18 ILISVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPLLGS-DFNDFLLYCPMVG 76
Query: 132 LQSLNPEEKLMELGSRSFFLCPKXXXXXXXXXSSGEDTGGLSGEDEANSAKKPSVLAPWL 191
++L+ + + LG+R+F LC K E++ G S + N A+K L W+
Sbjct: 77 PEALSTWDAIGSLGARNFMLCRKPEEKKV------EESNGRS-DSTINGARKGGSLKAWI 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,736,129
Number of extensions: 120965
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)