BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0523800 Os02g0523800|AK072296
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61760.1  | chr5:24813916-24814818 REVERSE LENGTH=301          226   1e-59
AT5G07370.2  | chr5:2331251-2332111 FORWARD LENGTH=287            214   4e-56

>AT5G61760.1 | chr5:24813916-24814818 REVERSE LENGTH=301
          Length = 300

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 161/296 (54%), Gaps = 8/296 (2%)

Query: 5   LRPPEHQVAGHRASADKLGPLVDGEGLFYKPLQAGERGXXXXXXXXXXXXXXXVPPRVRG 64
           L+ PEHQVAGH AS  KLGPLVD +G F+KPLQ   RG               VP  +  
Sbjct: 2   LKVPEHQVAGHIASDGKLGPLVDDQGRFFKPLQGDSRGEHEAKFYESFTSNMKVPDHIH- 60

Query: 65  AFFPRFHGTRFLXXXXXXXXXXXXHIVLDDLLAGLPSPCVADVKIGACTWPPRSPDPYVA 124
            +FP +HGT+ +            H+VLDD+++G  +P V DVKIG+ TW P   + Y  
Sbjct: 61  RYFPVYHGTQLVEASDGSGKLP--HLVLDDVVSGYANPSVMDVKIGSRTWYPDVSEEYFK 118

Query: 125 KCLAKDRETTSALLGFXXXXXXXXXXXXXXXWRPDRSELKGIDAAGVRRVLRRYVSTXXX 184
           KC+ KDR+TT+  LGF               WR ++  + G +A G R  LR++VS+   
Sbjct: 119 KCIKKDRQTTTVSLGFRVSGFKIFDHQESSFWRAEKKLVLGYNADGARLALRKFVSSNSP 178

Query: 185 XXXXXX----XXXXVYGGEGGVLAQLRELKAWFEEQTLYHFYSASILFGYDXXXXXXXXX 240
                         VYGG  G+LAQL ELK WFE QTLYHF S SIL  Y+         
Sbjct: 179 ADSNLTPNCAFASEVYGGCNGILAQLLELKDWFETQTLYHFNSCSILMIYENESILMQGG 238

Query: 241 XXX-XXXVRVKLVDFAHVDDGDGVIDHNFLGGLCSLIKFIGDIVAEVTEKASSDHS 295
                   +VKLVDFAHV DG+GVIDHNFLGGLCS IKFI DI+  V +   +D S
Sbjct: 239 DDAPAPRAQVKLVDFAHVLDGNGVIDHNFLGGLCSFIKFIKDILQSVEKHDETDTS 294



>AT5G07370.2 | chr5:2331251-2332111 FORWARD LENGTH=287
          Length = 286

 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/292 (42%), Positives = 153/292 (52%), Gaps = 12/292 (4%)

Query: 5   LRPPEHQVAGHRASADKLGPLVDGEGLFYKPLQAGERGXXXXXXXXXXXXXXXVPPRVRG 64
           L+ PEHQVAGH A   K GPLVD +G F+KPLQ   RG               VP  +  
Sbjct: 3   LKVPEHQVAGHIAKDGKPGPLVDDKGRFFKPLQGDSRGEIEVKFYESFSSNTEVPEHIH- 61

Query: 65  AFFPRFHGTRFLXXXXXXXXXXXXHIVLDDLLAGLPSPCVADVKIGACTWPPRSPDPYVA 124
            +FP +HGT+ +             +VL++LLA    P V DVK+G+ TW P + + Y+ 
Sbjct: 62  RYFPVYHGTQAVEGSDGAAM-----MVLENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQ 116

Query: 125 KCLAKDRETTSALLGFXXXXXXXXXXXXXXXWRPDRSELKGIDAAGVRRVLRRYVSTXXX 184
           KCL KD  TT+   GF               W+P+R  L+G+D  G R  LR++VS+   
Sbjct: 117 KCLKKDTGTTTVSSGFRISGFEVYDHKESSFWKPERKLLRGLDVDGARLTLRKFVSSNSL 176

Query: 185 XXX----XXXXXXXVYGGEGGVLAQLRELKAWFEEQTLYHFYSASILFGYDXXXXXXXXX 240
                         VYGG  G+L QL ELK WFE QTLYHF S SIL  Y+         
Sbjct: 177 SDTGSKPDSAFASSVYGGSHGILTQLLELKTWFENQTLYHFNSCSILMVYENESILKGND 236

Query: 241 XXXXXXVRVKLVDFAHVDDGDGVIDHNFLGGLCSLIKFIGDIVAEVTEKASS 292
                  +VKLVDFAHV DG+GVIDHNFLGGLCS I FI +I+    E A S
Sbjct: 237 DDARP--QVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREILQSPDESADS 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.142    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,058,893
Number of extensions: 155126
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)