BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0521700 Os02g0521700|AK068649
         (182 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29590.1  | chr2:12654602-12655432 REVERSE LENGTH=159          133   4e-32
AT1G04290.1  | chr1:1147721-1148352 REVERSE LENGTH=156             59   2e-09

>AT2G29590.1 | chr2:12654602-12655432 REVERSE LENGTH=159
          Length = 158

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 88/147 (59%), Gaps = 2/147 (1%)

Query: 21  CSLVDAVSSAATPPTADDXXXXXXXXXXXXVLGGIRVDSVRPGLVDCSFTVPSRLTDRSG 80
             L D V      P  ++             L GIRV+ V PG + CSF VP RLTDR  
Sbjct: 9   LQLSDEVVDDGEAPRVEEFLGEGKSFYENFSLRGIRVNRVEPGFISCSFKVPLRLTDRDK 68

Query: 81  CLAAGAVVSLVDEVGSAASIADGRPVKVSTDMSVSFVSLAQARPGDRLRITARALGHKGA 140
            LA GA+ +LVDEVG A    +G P+ VS DMS++F  L++A+ G+ L IT+R LG +G 
Sbjct: 69  NLANGAIANLVDEVGGALVHGEGLPMSVSVDMSIAF--LSKAKLGEELEITSRLLGERGG 126

Query: 141 YSATHVLISNAATGEVVAEGRHSLFGR 167
           Y  T V++ N  TGE++AEGRHS+FGR
Sbjct: 127 YKGTIVVVRNKMTGEIIAEGRHSMFGR 153



>AT1G04290.1 | chr1:1147721-1148352 REVERSE LENGTH=156
          Length = 155

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 51  VLGGIRVDSVRPGLVDCSFTVPSRLTDRSGCLAAGAVVSLVDEVGSAASIADGRPVK-VS 109
           V  G++VD + PG + CS  +P  L +    L  GA  +LVD +GSA     G     VS
Sbjct: 35  VTNGLKVDLIEPGRIVCSMKIPPHLLNAGKFLHGGATATLVDLIGSAVIYTAGASHSGVS 94

Query: 110 TDMSVSFVSLAQARPGDRLRITARALGHKGAYSATHVLISNAATGEVVAEGRHSLF 165
            +++VS+  L  A   + + I ++AL    A +   V +    TG+++A+GRH+ +
Sbjct: 95  VEINVSY--LDAAFLDEEIEIESKALRVGKAVAVVSVELRKKTTGKIIAQGRHTKY 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,944,225
Number of extensions: 89870
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)