BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0516400 Os02g0516400|Os02g0516400
         (274 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33510.2  | chr2:14194195-14195473 FORWARD LENGTH=205           66   2e-11
AT1G28070.1  | chr1:9783082-9783864 FORWARD LENGTH=177             52   4e-07

>AT2G33510.2 | chr2:14194195-14195473 FORWARD LENGTH=205
          Length = 204

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 51/105 (48%), Gaps = 20/105 (19%)

Query: 1   MTAPNIEMIASSLR----NCSLNXXXXXXXXXXXXXXXXXXEGSDDSEGVTVELNSEVAL 56
           M APN+E I  SL     NCSLN                    +  S+  T+ELNS ++L
Sbjct: 1   MKAPNMETITESLEKSMMNCSLNDRRRRVVGDGFGRSSSNEHMTPISDR-TLELNSHLSL 59

Query: 57  PYHWEQCLDI---------------RTGQVYYINWEDGTRTTIDP 86
           P HWEQCLD+               RTG++YYINW++G R   DP
Sbjct: 60  PCHWEQCLDLKVKLITTETSNSCRFRTGEIYYINWKNGMRVKEDP 104




 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 235 VLVAAGCRACFMYFMVPKTADVCPKCGSSGLLHLSR 270
           VLV AGC+ACFMYFMVPK  + CPKC +  LLH  R
Sbjct: 164 VLVVAGCKACFMYFMVPKLVEDCPKCAAQ-LLHFDR 198



>AT1G28070.1 | chr1:9783082-9783864 FORWARD LENGTH=177
          Length = 176

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 48 VELNSEVALPYHWEQCLDIRTGQVYYINWEDGTRTTIDP 86
          +EL+S  ++P H EQCLD++TG++YY +W  G R   DP
Sbjct: 42 LELSSHFSVPSHLEQCLDLKTGEIYYRSWNSGMRVKEDP 80




 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 235 VLVAAGCRACFMYFMVPKTADVCPKCGSSGLLHLSR 270
           VLV AGC+AC MYFMVPK    CPKC +  LLH  +
Sbjct: 136 VLVVAGCKACLMYFMVPKLFKDCPKCATQ-LLHFDQ 170



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,763,079
Number of extensions: 71773
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 4
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)