BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0515000 Os02g0515000|AK065046
         (309 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48830.2  | chr5:19800269-19802625 REVERSE LENGTH=518          257   5e-69

>AT5G48830.2 | chr5:19800269-19802625 REVERSE LENGTH=518
          Length = 517

 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/310 (44%), Positives = 192/310 (61%), Gaps = 12/310 (3%)

Query: 11  KLVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKAWENSKINEELMKTVTS- 69
           KL     + S  ++  +W+   T ++    +     W++EE   EN+  +  L + + + 
Sbjct: 209 KLEEETNKISGTINSDEWMGSFTQIVREAYQAACTAWLKEELYVENTDSDNNLARDLQAI 268

Query: 70  ------KIKEDDRILKRFNRLGKSELYLDLLYFLRFGSARSYSYFDAKFLAEHGARILED 123
                  + E D I  +  + GK +L+ + LYF +FGS      +D  F   HG  ILED
Sbjct: 269 TPLLIRMLNEKDAIFDKIRKSGKEDLFAEFLYFHKFGSPGKAFCYDLSFFRTHGVAILED 328

Query: 124 LVIFLADAVASIYIELISVDGDMPTDVVGSSLALCSLSTRELQRMRNEVAINGWLHQYFE 183
            +I LAD VASIY+ELISVD     ++    L++CSLS+R LQ++RNEVA+  WLHQ  E
Sbjct: 329 FMITLADGVASIYLELISVDSKFSNEMNSGGLSICSLSSRALQKLRNEVALYQWLHQNLE 388

Query: 184 SVVSMYEDRFELYVLSRKLCEK-PADNQAEVTNWWR---LGFGKPSTVTLLEYVHISSFS 239
           +VVSMYEDRF+LY+L  ++       +  E  +WWR   LG  K +  + L Y  IS FS
Sbjct: 389 AVVSMYEDRFDLYILQTQVINNLDGSDDTESLSWWRKFTLGKTKAAPSSPLRYSIISDFS 448

Query: 240 LPVRRTKELRALAGWRYYFSLLLEMSDIAMPFIRAVVTKVSAAVSYFWVSMIGRSLGLIF 299
           LPV+RTKEL+AL+GW YYFSL LE+SDI MP IR V+ KVS+ +S+F V++IGRS+GLIF
Sbjct: 449 LPVKRTKELKALSGW-YYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGLIF 507

Query: 300 SGIRQSLGWR 309
           +GIRQSL W+
Sbjct: 508 TGIRQSLRWK 517



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,309,907
Number of extensions: 250553
Number of successful extensions: 742
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)