BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0513800 Os02g0513800|AK120082
         (605 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28120.1  | chr1:9813219-9815143 REVERSE LENGTH=307             62   1e-09

>AT1G28120.1 | chr1:9813219-9815143 REVERSE LENGTH=307
          Length = 306

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 22/224 (9%)

Query: 24  RLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDSIGTREEDRLLAAVRALATKAENL 83
           ++K L   Y   R    D  CF+RSF+FSYLE +++S    E DR+   V       +NL
Sbjct: 72  KIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNL 131

Query: 84  QWASEFSQKHKAFERLIEKIKGWKRMQEHPISIIRGKILEFFSSYDTTDDIFAFLRLVAA 143
            + ++F+ +   F   +E++    +  E  IS    +++        +D I  F R V A
Sbjct: 132 GY-TDFTFE-DFFALFLEQLDDILQGTEESISY--DELVNRSRDQSVSDYIVMFFRFVTA 187

Query: 144 TWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVYATSAAVKACAEALRVTVQVENVH 203
             + TR   +E   T    N  ++ +C   V      +    + A ++AL V ++V  + 
Sbjct: 188 GDIRTRADFFEPFITGLS-NATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLD 246

Query: 204 DGTCESTHYIVR-----------------GAPCVTLLRIESHYD 230
             +C+S    V                   AP +TLL    HYD
Sbjct: 247 RSSCDSGGVTVNHHDFVPVGITNEKDEEASAPFITLLYRPGHYD 290



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,398,091
Number of extensions: 497921
Number of successful extensions: 1471
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1471
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 501
Effective length of database: 8,255,305
Effective search space: 4135907805
Effective search space used: 4135907805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)