BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0511600 Os02g0511600|AK111241
(132 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32100.1 | chr4:15511757-15512218 REVERSE LENGTH=123 59 9e-10
AT4G32110.1 | chr4:15515769-15516408 REVERSE LENGTH=125 56 6e-09
AT4G32090.1 | chr4:15509990-15510820 REVERSE LENGTH=125 55 9e-09
AT4G32105.1 | chr4:15513342-15513958 REVERSE LENGTH=125 54 3e-08
AT1G32583.1 | chr1:11787351-11788103 FORWARD LENGTH=180 53 5e-08
AT4G24972.1 | chr4:12838220-12839619 FORWARD LENGTH=177 51 1e-07
>AT4G32100.1 | chr4:15511757-15512218 REVERSE LENGTH=123
Length = 122
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 38 LVVRQRATGRVVEGKPEYAVEVANRCRCAQSRVVLRCYGLSSVESVDPRAIRPVDDERCV 97
L V Q TG +VE KPE+ V+V N C + L C SV +D + + D C+
Sbjct: 32 LSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTLSCVRFKSVTPIDSKVLSKSGD-TCL 90
Query: 98 LRGGRVIRRGAPPVRFTYAWMTPFDFPLVSSQVHC 132
L G I + F Y W T FD +V + C
Sbjct: 91 LGNGDSIH----DISFKYVWDTSFDLKVVDGYIAC 121
>AT4G32110.1 | chr4:15515769-15516408 REVERSE LENGTH=125
Length = 124
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 38 LVVRQRATGRVVEGKPEYAVEVANRC-RCAQSRVVLRCYGLSSVESVDPRAIRPVDDERC 96
L V+Q TG++V+ KPE+ V V N C C L C G +SV +D + D C
Sbjct: 30 LSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELLCVGFNSVTPIDTSLLLKSGDA-C 88
Query: 97 VLRGGRVIRRGAPPVRFTYAWMTPFDFPLVSSQVHC 132
++ G+ I V F Y W T FD ++ + C
Sbjct: 89 LVNAGKFIVPHVDIV-FKYVWDTSFDLKVIDGVMVC 123
>AT4G32090.1 | chr4:15509990-15510820 REVERSE LENGTH=125
Length = 124
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 45 TGRVVEGKPEYAVEVANRCRCAQSRVVLRCYGLSSVESVDPRAIRPVDDERCVLRGGRVI 104
TGR + G+PE+ V V N C C Q V L C G + + V P ++P C++ G +
Sbjct: 36 TGREIGGQPEWKVTVINTCNCFQKHVTLSCGGFAPAKPVKPLLLQP-QGNTCLMIKGAAL 94
Query: 105 RRGAPPVRFTYAWMTPFDFPLVSSQV 130
GA +FTYA P+ F V S+V
Sbjct: 95 PAGA-TAQFTYAGQ-PYIFRPVGSKV 118
>AT4G32105.1 | chr4:15513342-15513958 REVERSE LENGTH=125
Length = 124
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 38 LVVRQRATGRVVEGKPEYAVEVANRC-RCAQSRVVLRCYGLSSVESVDPRAIRPVDDERC 96
L V+Q TG++V+ KPE+ V V N C C L C G SV V + D C
Sbjct: 30 LSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLSCVGFQSVTPVATSLLSKSGD-IC 88
Query: 97 VLRGGRVIRRGAPPVRFTYAWMTPFDFPLVSSQVHC 132
+L G I V F Y W T FD ++ + C
Sbjct: 89 LLNAGNFIFPHVDFV-FNYVWDTSFDLKVIDGVIVC 123
>AT1G32583.1 | chr1:11787351-11788103 FORWARD LENGTH=180
Length = 179
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 37 DLVVRQRATGRVVEGKPEYAVEVANRC--RCAQSRVVLRCYGLSSVESVDPRAIRPVDDE 94
D+V+ Q +T + G P Y VE+ N C C + + + C SSV V+PR R +D +
Sbjct: 84 DIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYD 143
Query: 95 RCVLRGGRVIRRGAPPVRFTYAWMTPFDFPLVSSQVHC 132
C++ G+ + P ++ + F +PL + V C
Sbjct: 144 DCLVNDGQPL---GPGQSLSFQYANSFSYPLSVASVSC 178
>AT4G24972.1 | chr4:12838220-12839619 FORWARD LENGTH=177
Length = 176
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 37 DLVVRQRATGRVVEGKPEYAVEVANRCR--CAQSRVVLRCYGLSSVESVDPRAIRPVDDE 94
D+VV Q T + G P Y VE+ N+C C SR+ + C SS + ++PR + + +
Sbjct: 81 DIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYD 140
Query: 95 RCVLRGGRVIRRGAPPVRFTYAWMTPFDF 123
C++ G+ + G+ + F YA P+
Sbjct: 141 DCLVNNGKPLPFGS-TLSFHYANTFPYHL 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,329,393
Number of extensions: 76108
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 6
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)