BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0507600 Os02g0507600|J065142K02
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24270.1  | chr1:8608123-8608743 REVERSE LENGTH=207             73   2e-13
AT5G13090.1  | chr5:4153758-4154567 REVERSE LENGTH=270             69   2e-12
AT1G12020.1  | chr1:4062625-4063305 REVERSE LENGTH=227             67   1e-11
AT1G62422.1  | chr1:23100419-23100985 REVERSE LENGTH=189           61   7e-10

>AT1G24270.1 | chr1:8608123-8608743 REVERSE LENGTH=207
          Length = 206

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 47  PEDQQVLAYLVTRCLQGAGAAHHXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFW 106
            ED +VLAYL+TR L                                + C CFDCYTS+W
Sbjct: 100 AEDLEVLAYLITRSLNTTNVV--------------SCKKKRSHKAPLLDCQCFDCYTSYW 145

Query: 107 SRWDCSPSRELIHDAIEAFEDHLAAAE 133
           S+WD S +RELI+  IEAFEDHL   E
Sbjct: 146 SKWDSSSNRELINQIIEAFEDHLTRDE 172



>AT5G13090.1 | chr5:4153758-4154567 REVERSE LENGTH=270
          Length = 269

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 48  EDQQVLAYLVTRCLQGAGAAHHXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFWS 107
           E+++VLAYL+TR   G   +                            C CFDCYT++W 
Sbjct: 57  EEREVLAYLITR---GTTISDRGNSSSKNKTKKKSNKSSKNHKPPVFDCECFDCYTNYWF 113

Query: 108 RWDCSPSRELIHDAIEAFEDH 128
           RWD SP+RELIH+ IEAFE+H
Sbjct: 114 RWDSSPNRELIHEIIEAFENH 134



>AT1G12020.1 | chr1:4062625-4063305 REVERSE LENGTH=227
          Length = 226

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 7   KPGKGGKIHPSPLGGGDGDPVXXXXXXXXXXXXXXXXXXXPEDQQVLAYLVTRCLQGAGA 66
           K  + G +HPSP      D +                   PED++VLAYL++     A  
Sbjct: 3   KLYRKGTVHPSPPQIKSNDHLLTLLPVAIFSLAAVLS---PEDREVLAYLIS----TASY 55

Query: 67  AHHXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFWSRWDCSPSRELIHDAIEAFE 126
           +                            C CF CYTS+W RWD SPSR+LIH+ I+AFE
Sbjct: 56  SGERNPTSRLNKTKAHKKALFDNHSPLFHCDCFSCYTSYWVRWDSSPSRQLIHEIIDAFE 115

Query: 127 DHL 129
           D L
Sbjct: 116 DSL 118



>AT1G62422.1 | chr1:23100419-23100985 REVERSE LENGTH=189
          Length = 188

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 36/138 (26%)

Query: 1   MKSLCPKPGKGGKIHPSPLGGGDGDPVXXXXXXXXXXXXXXXXXXXPEDQQVLAYLVT-- 58
           MK LC K    G +HPSP      D                      ED++VLAYL++  
Sbjct: 1   MKKLCRK----GTVHPSPPPAIKTDE--QFLSLLPVAILSLVAALSVEDREVLAYLISNS 54

Query: 59  -------RCLQGAGAAHHXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFWSRWDC 111
                  R  +     HH                          C CF CYTS+W RWD 
Sbjct: 55  GDSNRISRLKKNKEDNHHSPLFL---------------------CDCFSCYTSYWVRWDT 93

Query: 112 SPSRELIHDAIEAFEDHL 129
           SP R+LIH+ I+A+ED L
Sbjct: 94  SPRRQLIHEIIDAYEDSL 111



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,588,490
Number of extensions: 85360
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)