BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0506400 Os02g0506400|Os02g0506400
         (379 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67340.1  | chr1:25230323-25231622 FORWARD LENGTH=380          226   2e-59
AT5G50450.1  | chr5:20543519-20544698 REVERSE LENGTH=337          215   3e-56

>AT1G67340.1 | chr1:25230323-25231622 FORWARD LENGTH=380
          Length = 379

 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 160/315 (50%), Gaps = 10/315 (3%)

Query: 46  FDALHDELVVSILADVXXXXXXXXXXXXXMLTCRRFRELGKHGLVLXXXXXXXXXXXXXX 105
            D++ D+LV+SIL  +             +LTC+R + L  + +VL              
Sbjct: 44  LDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHN 103

Query: 106 WCDDAHRFLVRCAEAGNVEASYLLGMIMFYCFENRKXXXXXXXXXXXXXXXXXXYSMAII 165
           W + +HRFL RC +AG++EA Y LGMI FYC +NR                   YS+A+I
Sbjct: 104 WSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVI 163

Query: 166 QFNGSGLPKDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVXXXXXXXXXXXIQA 225
           QFNGSG  K+ ++L+AG  LCARAA  GH DALRELGHC+ DGYGV           +QA
Sbjct: 164 QFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQA 223

Query: 226 NFRELCXXXXXXXXXXXXXXXXXXECKPPGPH----MC-LLSDYGCHVXXXXXXXXXXXX 280
           N REL                      P  P+     C LLSD+GC+V            
Sbjct: 224 NARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPANRFL 283

Query: 281 XXXXXWYASRPLASGAGAAALRMCSQPTCGRPETRKHEFRRCSVCSGVIYCSRACQAMHW 340
                W+A R          LR+CS   CGRPETRKHEFRRCSVC  V YCSRACQA+ W
Sbjct: 284 AD---WFAVR--GGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDW 338

Query: 341 KVAHKSACVPMAHWL 355
           K+ HK  C P+  WL
Sbjct: 339 KLRHKMDCAPVQRWL 353



>AT5G50450.1 | chr5:20543519-20544698 REVERSE LENGTH=337
          Length = 336

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 148/310 (47%), Gaps = 19/310 (6%)

Query: 46  FDALHDELVVSILADVXXXXXXXXXXXXXMLTCRRFRELGKHGLVLXXXXXXXXXXXXXX 105
           F+ LHD+L++SIL  +             + TC+R   LG H LVL              
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 106 WCDDAHRFLVRCAEAGNVEASYLLGMIMFYCFENRKXXXXXXXXXXXXXXXXXXYSMAII 165
           W D +H+FL  C  AGN++ASY LGMI FYC +N                    YS+++I
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 166 QFNGSGLPKDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVXXXXXXXXXXXIQA 225
           QFNGSG  K  +NL+AG  LCAR+A  GH DALRELGHC+ DGYGV           IQA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 226 NFRELCXXXXXXXXXXXXXXXXXXECKPPGPHMCLLSDYGCHVXXXXXXXXXXXXXXXXX 285
           N REL                        G     L+D    +                 
Sbjct: 202 NARELACSLRSYLSL------------KSGDENETLTD----LSVVPVQEIHPVNRFLKE 245

Query: 286 WYASRPLASGAGAAALRMCSQPTCGRPETRKHEFRRCSVCSGVIYCSRACQAMHWKVAHK 345
           W++S  +    G   LRMCS   CGRPETR HEFRRCSVC  V YCSR CQA+ W+  HK
Sbjct: 246 WFSSGRVDLAEG---LRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHK 302

Query: 346 SACVPMAHWL 355
             C P+  W+
Sbjct: 303 VECTPLDLWV 312



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,606,953
Number of extensions: 157839
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 4
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)