BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0494600 Os02g0494600|Os02g0494600
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17010.1  | chr4:9576442-9577627 FORWARD LENGTH=161            112   7e-26

>AT4G17010.1 | chr4:9576442-9577627 FORWARD LENGTH=161
          Length = 160

 Score =  112 bits (280), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 78/114 (68%)

Query: 1   MDKLVQFGRKAWFVVRVLSGYEERRIRAHRLQMQQQIARAQAKKEELRKQPEQIILSEVR 60
           M+KL+++GRKA F VRVLSGYEERRIR++RLQ++++I +A  +K E+ + PEQI+LSEVR
Sbjct: 1   MNKLLEYGRKAMFYVRVLSGYEERRIRSYRLQLEKRIQQANQRKVEINRLPEQIVLSEVR 60

Query: 61  XXXXXXXXXXXXXEETETAIDEYFKPIDKNAKIITDMQPEKEEKQIKEMTKVMQ 114
                        E TE  I++YFKPIDK+A  I ++Q E E+K +  M    Q
Sbjct: 61  RMVEEMQNLNKQIENTEAQIEDYFKPIDKHASTIMEIQLEGEKKTMGTMMNATQ 114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,060,340
Number of extensions: 60389
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)