BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0480900 Os02g0480900|AK073830
(591 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14010.1 | chr3:4637164-4640691 FORWARD LENGTH=596 267 1e-71
AT1G54170.1 | chr1:20221353-20224919 REVERSE LENGTH=588 236 3e-62
AT4G26990.1 | chr4:13551150-13554253 REVERSE LENGTH=475 60 3e-09
AT5G54920.2 | chr5:22302111-22305576 FORWARD LENGTH=523 56 6e-08
>AT3G14010.1 | chr3:4637164-4640691 FORWARD LENGTH=596
Length = 595
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/381 (42%), Positives = 233/381 (61%), Gaps = 38/381 (9%)
Query: 11 RASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSRDRLIYVLTQL 70
++S+NGFP ++ + E N + + F+G G L S DRL+Y T
Sbjct: 7 KSSSNGFPLKRGETEEVLHKTNTSNTV------FNG--EAGSLKR--LSLDRLVYFTTCK 56
Query: 71 IGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAADVVKKP--ET 128
IG HV+VH++NGS+ +GI HA N +KD G+I+KMA +IKDG+ RG KS ++ V+KP +T
Sbjct: 57 IGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRSEFVRKPPSKT 116
Query: 129 MIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRS-HYPEERELERWAPDE 187
IIP ELVQ++AKD+++ + + EK +L+ DS+IS+S H ER+L+RW PDE
Sbjct: 117 FIIPADELVQVIAKDLSVSSNNMSNAVQGEKPSELLTDSSISQSYHVDRERQLQRWVPDE 176
Query: 188 GDSECIELEK-YDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMRELEKHASR 246
+LE +D NR W+QFE N +LFGVKSTF+E+LYTT+LERGP ++LE+HA +
Sbjct: 177 TIPHGADLENVFDNPWNRKWNQFEVNKSLFGVKSTFDEDLYTTRLERGPQTKQLEEHAQK 236
Query: 247 IAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAVRRDT--DNTKFKSSTNVLSNTN 304
IAREIE E T+D+H+AEERGL L+++FD DEE +YS+VR T ++ F N L +T
Sbjct: 237 IAREIEAETTRDIHVAEERGLQLNENFDFDEEARYSSVRPVTGFGDSGFDLEDNALLDT- 295
Query: 305 QVDSLTRAGNTNPKALLSTADEESSSHLFGTDLPVT---------NNVSQLVSQS-QLNK 354
+ LT G++ S + +SS +L V+ NV Q S S Q +K
Sbjct: 296 -CNDLTFGGSST-----SDGQKPASSGKGCEELRVSGDSQSSRKNKNVDQSCSTSKQQSK 349
Query: 355 LLP-----IDESRLDDKLTKD 370
P I ES+LD++ K+
Sbjct: 350 DFPAAGSNISESQLDEQRRKN 370
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 485 NPNAKEFKLNPNAKSFTP-STSVRPPQPPASDGPYYY-------ANNMPTAPLGPPMFPP 536
NPNAKEFKLNP AKSF P ++ PPQ P +D +YY MP P PP
Sbjct: 468 NPNAKEFKLNPKAKSFKPLQSAAAPPQSPIADASFYYPGPSHVPVQQMPGMPPVNYGLPP 527
Query: 537 AYGGQP-MVYNAQPGPSPQGYMHP 559
G QP M+Y+ PQ Y HP
Sbjct: 528 YPGNQPQMMYH------PQAYYHP 545
>AT1G54170.1 | chr1:20221353-20224919 REVERSE LENGTH=588
Length = 587
Score = 236 bits (602), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 176/278 (63%), Gaps = 18/278 (6%)
Query: 12 ASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKL-GHGSPSRDRLIYVLTQL 70
+S+NGF HR+ ++E + ++ ENG +PS+ L+Y T
Sbjct: 9 SSSNGFSHRRFEKEA---------WMNNAQPSVDNTENGWDAESVDTPSQKLLVYFTTCN 59
Query: 71 IGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAADVVKKPETMI 130
IG V+VH+KNGS+ SGI HA N +KD G+I+KMA +I+D +RG KS V KP + +
Sbjct: 60 IGHQVEVHLKNGSVYSGIFHAANVEKDFGIILKMACLIRD--SRGTKSR--TVSKPSSKL 115
Query: 131 --IPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPE-ERELERWAPDE 187
IP ELVQ++AKD+ L D + EK +L+ DS IS+ + + EREL+ W PDE
Sbjct: 116 LKIPADELVQVIAKDLPLSSDSVSDSVQCEKPLELLTDSLISQFYNVDLERELKPWVPDE 175
Query: 188 GDSECIELEK-YDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMRELEKHASR 246
+C +LE +D R W+QFE N LFGV STF+EELYTTKLERGP RELE+ A R
Sbjct: 176 DVPDCSDLENVFDDPWKRGWNQFEVNKTLFGVTSTFDEELYTTKLERGPGTRELEEQALR 235
Query: 247 IAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAV 284
IAREI GE+T+D+H+AEERGL L FD DEE KYS+V
Sbjct: 236 IAREIVGENTRDIHVAEERGLQLSGKFDIDEETKYSSV 273
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 485 NPNAKEFKLNPNAKSFTPS-TSVRP--PQPPASDGPYYYANNMPTAPLGPPM-------- 533
NPNAKEFKLNPNAKSF PS ++ RP PQ P DG +YY P PPM
Sbjct: 469 NPNAKEFKLNPNAKSFKPSPSATRPQSPQSPVFDGSFYY-------PPVPPMPGLHIRYG 521
Query: 534 FPPAYGGQ--PMVYNAQPGPSP-QGYMHPAXXXXXXXXXXXXTRPVYY-----YAPEMQQ 585
A+ GQ PM+YN SP Q Y P RP+ + Y PEM
Sbjct: 522 TGAAFPGQQHPMMYNNTTQLSPNQTYYSPNSPQYPQPMMVTQQRPILFMPPTPYQPEM-P 580
Query: 586 YRGRN 590
Y+GR+
Sbjct: 581 YKGRD 585
>AT4G26990.1 | chr4:13551150-13554253 REVERSE LENGTH=475
Length = 474
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 63 LIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAADV 122
LI +IG V VHVK+GS+ SGI + D G+++K A++ K G++ ++ V
Sbjct: 23 LIAATMCIIGLQVHVHVKDGSVFSGIFFTASVDNGFGIVLKDARITKKGTSISNVASGSV 82
Query: 123 VKKPETMIIPGRELVQILAKDVAL 146
V +T++I +VQI+A+ V+L
Sbjct: 83 V---DTLVILSSTIVQIIAEGVSL 103
>AT5G54920.2 | chr5:22302111-22305576 FORWARD LENGTH=523
Length = 522
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 61 DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAA 120
+ L+ +IG V VH+ +GS+ SGI + + + + +++K A++ K G ++ +
Sbjct: 25 EALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVESG 84
Query: 121 DVVKKPETMIIPGRELVQILAKDVALGGD 149
+V ET++I +VQI+A+ V+L +
Sbjct: 85 KIV---ETLVILSSNIVQIVAEGVSLSSN 110
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,193,027
Number of extensions: 559757
Number of successful extensions: 2329
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2343
Number of HSP's successfully gapped: 6
Length of query: 591
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 487
Effective length of database: 8,255,305
Effective search space: 4020333535
Effective search space used: 4020333535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)