BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0479300 Os02g0479300|AB110198
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25400.1  | chr3:9213236-9214144 FORWARD LENGTH=142            142   6e-35

>AT3G25400.1 | chr3:9213236-9214144 FORWARD LENGTH=142
          Length = 141

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 78/106 (73%)

Query: 21  TVGLEELRRRMADFARERDWEQFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPGWDEA 80
            V L+ L ++M DFA+ RDWE++HSPRN            SEIFQWKGEV +G P W E 
Sbjct: 13  VVSLQTLSKKMDDFAKARDWEKYHSPRNLLLAMVGEVGELSEIFQWKGEVARGCPDWKEE 72

Query: 81  EKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPASQ 126
           EKVHLGEEL+DVLLYLVRLSD CGVDLG AALRK+E+NA KYP  +
Sbjct: 73  EKVHLGEELSDVLLYLVRLSDACGVDLGKAALRKIELNAIKYPVPK 118



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,759,025
Number of extensions: 92388
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)