BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0477700 Os02g0477700|AK067614
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65580.1 | chr1:24377598-24383940 REVERSE LENGTH=1102 175 1e-44
AT1G05630.1 | chr1:1682483-1687153 FORWARD LENGTH=1171 169 9e-43
AT2G31830.2 | chr2:13532737-13537665 REVERSE LENGTH=1174 158 1e-39
AT2G43900.1 | chr2:18178801-18183823 REVERSE LENGTH=1317 158 1e-39
>AT1G65580.1 | chr1:24377598-24383940 REVERSE LENGTH=1102
Length = 1101
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 1 SPGPIDNIMRSTLIEAEPLYKQFEYMKVLVGSWNVGQEKASYESLRAWLKLPTPXXXXXX 60
SPGP+DN++R+ L E LY + E +K+L G+WNVG+ +AS +SL +WL
Sbjct: 513 SPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGEGRASTDSLVSWLGCAATGVEIVV 572
Query: 61 XXXXXXDMGAGFLAMSAAKETVGLEGSPNGDWWLDAIGQQL-KGYSFERVGSRQMAGLLI 119
+MGAG LAMSAAKETVGLEGSP G WWLD IG+ L +G SF RVGSRQ+AGLLI
Sbjct: 573 VGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLI 632
Query: 120 CVWVRTHLKQFIGDIDNAAVACGLGRAIGNK 150
CVWVR LK +GD+D AAV CG GRAIGNK
Sbjct: 633 CVWVRHDLKPHVGDVDAAAVPCGFGRAIGNK 663
>AT1G05630.1 | chr1:1682483-1687153 FORWARD LENGTH=1171
Length = 1170
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 110/151 (72%), Gaps = 1/151 (0%)
Query: 1 SPGPIDNIMRSTLIEAEPLYKQFEYMKVLVGSWNVGQEKASYESLRAWLKLPTPXXXXXX 60
SPGP+DNI+R+ L + E LY + + +++L+G+WNVGQ +AS+++L +WL T
Sbjct: 546 SPGPLDNIIRTELSQKETLYARQDNVRILIGTWNVGQGRASHDALMSWLGSVTSDVGIVA 605
Query: 61 XXXXXXDMGAGFLAMSAAKETVGLEGSPNGDWWLDAIGQQL-KGYSFERVGSRQMAGLLI 119
+MGAGFLAMSAAKETVGLEGS G WW+DAIG+ L + +FER+GSRQ+AGLLI
Sbjct: 606 VGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWIDAIGKALDEKNTFERMGSRQLAGLLI 665
Query: 120 CVWVRTHLKQFIGDIDNAAVACGLGRAIGNK 150
+W R ++ +GD+D AAV CG GRAIGNK
Sbjct: 666 SLWARKDIRTHVGDLDVAAVPCGFGRAIGNK 696
>AT2G31830.2 | chr2:13532737-13537665 REVERSE LENGTH=1174
Length = 1173
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 1 SPGPIDNIMRSTLIEAEPLYKQFEYMKVLVGSWNVGQEKASYESLRAWLKLPTPXXXXXX 60
SPGP+D+++R+ L + E Y + + +K+L+G+WNVG+ +AS +L +WL
Sbjct: 555 SPGPLDSLIRTELSQKEMAYARQDSVKILIGTWNVGEGRASRGALVSWLGSAVSDVGIVA 614
Query: 61 XXXXXXDMGAGFLAMSAAKETVGLEGSPNGDWWLDAIGQQL-KGYSFERVGSRQMAGLLI 119
DMGAGFLAMS AKETVG+EGS G WWLDAIG L + +FER+GSRQ+AGLLI
Sbjct: 615 IGLQEVDMGAGFLAMSTAKETVGVEGSAVGQWWLDAIGNALDERNTFERMGSRQLAGLLI 674
Query: 120 CVWVRTHLKQFIGDIDNAAVACGLGRAIGNK 150
+WVR ++ +GD+D AAV CG GRAIGNK
Sbjct: 675 SLWVRKSIRTHVGDLDVAAVPCGFGRAIGNK 705
>AT2G43900.1 | chr2:18178801-18183823 REVERSE LENGTH=1317
Length = 1316
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 1 SPGPIDNIMRSTLIEAEPLYKQFEYMKVLVGSWNVGQEKASYESLRAWLKLPTPXXXXXX 60
SPGP+D I+RS L E E Y Q + +++L GSWNVGQ KAS+++L +WL
Sbjct: 551 SPGPLDGIIRSELAEKERTYAQTDSVRILTGSWNVGQGKASHDALMSWLGSVASDVGILV 610
Query: 61 XXXXXXDMGAGFLAMSAAKETVG-LEGSPNGDWWLDAIGQQLKGYS-FERVGSRQMAGLL 118
+MGAGFLAMSAAKE+VG EGS G +W+D IG+ L + FER+GSRQ+AGLL
Sbjct: 611 VGLQEVEMGAGFLAMSAAKESVGGNEGSTIGQYWIDTIGKTLDEKAVFERMGSRQLAGLL 670
Query: 119 ICVWVRTHLKQFIGDIDNAAVACGLGRAIGNK 150
I +WVR +L+ +GDID AAV CG GRAIGNK
Sbjct: 671 ISLWVRKNLRTHVGDIDVAAVPCGFGRAIGNK 702
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,528,087
Number of extensions: 125607
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)