BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0469200 Os02g0469200|AK066401
(689 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58100.1 | chr5:23507828-23514863 FORWARD LENGTH=946 838 0.0
AT3G28720.1 | chr3:10782276-10784339 FORWARD LENGTH=688 80 3e-15
>AT5G58100.1 | chr5:23507828-23514863 FORWARD LENGTH=946
Length = 945
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/689 (57%), Positives = 512/689 (74%), Gaps = 7/689 (1%)
Query: 4 GFSESEINLLRENKTLQARILQS--KSDKRLYLDIEKGVNRRPLYESHPLSSFSWTTSDN 61
GFSESEI+ L+ENK + +LQS S+ L D+ R+PLY+ HP+ FSWT ++
Sbjct: 261 GFSESEISYLKENKEILKNLLQSGKPSENILAFDMV----RKPLYDRHPMLKFSWTNAEE 316
Query: 62 MDMGDWSKKCKEALSNFELLKEGKSKDDIIYDKAVQVLHGKKDELHDIFESALKSSDLKG 121
D +W C++AL+ E L GK ++I K +Q+L GK +++ E L++ D
Sbjct: 317 TDTAEWFNACQDALNKLEQLSLGKDAAELIQSKVLQLLRGKNEDMKVFLEKDLRAGDFSN 376
Query: 122 LHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVGGDGVRTELSLPNVAKTVGXXXXXXXXX 181
L+AECLTD+WIG+ R+AFIDL+AGPF+WGP+VGG+GVRTELSLPNV T+G
Sbjct: 377 LNAECLTDIWIGKGRWAFIDLTAGPFSWGPSVGGEGVRTELSLPNVGTTIGAVAEISEDE 436
Query: 182 XXXKLQDTIRERFSSFGENYH-AVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERMH 240
KLQ I+++FS FGEN H AVDILLAEIDVYELFAFKHC GR+V+LALC+ELDERM
Sbjct: 437 AEDKLQTAIQDKFSVFGENDHQAVDILLAEIDVYELFAFKHCKGRKVKLALCEELDERMR 496
Query: 241 DLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVL 300
DLK+EL+ ++ + D+ +K+KA+DAL RME WNLF D EE +YTVARD+FLAHLG+ L
Sbjct: 497 DLKTELQSFDGEEYDETHKRKAMDALRRMESWNLFSDEREEFQNYTVARDTFLAHLGATL 556
Query: 301 WGSMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQ 360
WGSM H+I+PSV+ A H+Y+K+SFQL F+TQEKVR +KQ PV++K++ +GLSS+LL Q
Sbjct: 557 WGSMRHIISPSVADGAFHHYEKISFQLVFITQEKVRQIKQLPVDLKALMDGLSSLLLPSQ 616
Query: 361 KPMFSQRMLSLSEDPXXXXXXXXXXXXXXVPLLLVNGTYKSTVHTYLDSAILQHQLQRLS 420
KP+FSQ ML+LSEDP VPLLLVNGTY+ TV +YLDS+ILQ+QLQR++
Sbjct: 617 KPLFSQHMLTLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTVRSYLDSSILQYQLQRVN 676
Query: 421 EHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQC 480
+H SLKGGH++ RSTLEIPIFW I +PLL+DKHYQAK+LSNMVVVVQSE SWESHLQC
Sbjct: 677 DHTSLKGGHAHSRSTLEIPIFWLISGDPLLIDKHYQAKALSNMVVVVQSEASSWESHLQC 736
Query: 481 NGRSILWDLRRPVKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKG 540
NGRS+LWDLR PVKAA+A+ AE+++GLLP HL YS AHE+A EDWTWSVGCNP S+TS+G
Sbjct: 737 NGRSLLWDLRSPVKAAMASVAEHLAGLLPLHLVYSVAHESAIEDWTWSVGCNPFSVTSQG 796
Query: 541 WQLSEFQRDVIARNYIITAVEESIQIINSAIQQLITERTSERGFKLFKAQERVLVEKYNS 600
W LS+FQ D IAR+Y+ITA+EESIQ +NS I L ERT+++ FKLF+++ER L+ KY
Sbjct: 797 WLLSQFQSDTIARSYMITALEESIQAVNSGIHLLRLERTNKKTFKLFQSRERELMNKYKY 856
Query: 601 VVSLWRRVSAMSKGLRYGDAVKLTSMLEEASHGFANAVNSTISSLHPVQCTRERKVDVQL 660
VVSLWRR+S ++ RYGDA++ LEEA+ F VN+T+ LHP+ CT+ERKV V++
Sbjct: 857 VVSLWRRLSNVAGETRYGDAMRFLHTLEEATSSFVREVNATVGVLHPIHCTKERKVKVEV 916
Query: 661 DLTTIXXXXXXXXXXXXXXXXXXXKPKIN 689
D+TTI KPKIN
Sbjct: 917 DMTTIPAFIIVLILLYAVLRPRAPKPKIN 945
>AT3G28720.1 | chr3:10782276-10784339 FORWARD LENGTH=688
Length = 687
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 436 LEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQCNGRSILW---DLRRP 492
L + +F + PLLLD+++Q+ + +MV+ V++ S CNGR + DL RP
Sbjct: 435 LPVYVFDLDINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDLERP 494
Query: 493 VKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKGWQLSEFQRDVIA 552
+ +I + + G+ +HL +SP H T D+TWS+G P S LS Q+D
Sbjct: 495 LVGSILQS---MWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAK 551
Query: 553 RNYIITA----VEESIQIINSAI 571
RN I+T+ + +I +I+SA+
Sbjct: 552 RNVILTSLNTTITSAIDVIDSAV 574
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 124 AECLTDMWIGRDRFAFIDLSAGPFAWGPAVGGDGV 158
+CL +W G+DR+ +IDLSAGP +GPA+ GDGV
Sbjct: 229 TKCLGSIWTGKDRYLWIDLSAGPVDYGPALSGDGV 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,594,067
Number of extensions: 549513
Number of successful extensions: 1587
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 3
Length of query: 689
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 584
Effective length of database: 8,227,889
Effective search space: 4805087176
Effective search space used: 4805087176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)