BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0460200 Os02g0460200|AK065150
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111 104 1e-23
AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113 100 3e-22
AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182 98 1e-21
>AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111
Length = 110
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXX 60
M+GVWVFK+G++R VENP RRKV+V++P+GEVV+SY
Sbjct: 1 MSGVWVFKNGVIRLVENPNQSGSDTQN------RRKVMVYLPTGEVVSSYSTLEQILQSL 54
Query: 61 --XXXXXXTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDA 113
D LLQFH+RS++ LIS+PRDF+KF V+MYDIVVK N F VRD+
Sbjct: 55 GWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRDS 109
>AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113
Length = 112
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXX 60
M+GVWVF +G++R VENP RR VLV++P+GE V+SY
Sbjct: 1 MSGVWVFNNGVIRLVENPNQSGGVSTQSHG---RRNVLVYLPTGEAVSSYSSLEQILRSL 57
Query: 61 XXXXXXT-DPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRD 112
+ D L+Q+H+RS++ LIS+PRDFSKF V+MYDIVVK N F VRD
Sbjct: 58 GWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRD 110
>AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182
Length = 181
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 1 MAGVWVF-KDGIVRRVENPXXXXXXXXX-------XXXXXXRRKVLVHVPSGEVVASYXX 52
M+GVWVF K+G++R VENP RRK+LVH+PS EVV+SY
Sbjct: 58 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 117
Query: 53 XXXXXXXXXXXXXXTDPC---LLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFE 109
+ LLQFH+R+++ LIS+PRDFSKF +HMYDIVVK NVF
Sbjct: 118 LEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKNPNVFH 177
Query: 110 VRD 112
VRD
Sbjct: 178 VRD 180
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,822,844
Number of extensions: 45941
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)