BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0437200 Os02g0437200|AY900120
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61210.1 | chr5:24624027-24625366 FORWARD LENGTH=301 276 8e-75
AT1G13890.1 | chr1:4751581-4752844 FORWARD LENGTH=264 244 4e-65
AT5G07880.1 | chr5:2515587-2516694 REVERSE LENGTH=252 216 1e-56
>AT5G61210.1 | chr5:24624027-24625366 FORWARD LENGTH=301
Length = 300
Score = 276 bits (706), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 136/216 (62%), Positives = 168/216 (77%), Gaps = 1/216 (0%)
Query: 69 NDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQI 128
N+FRD+GG+E QSVQELEGYA YKAEETT+ VQGC+++AE++R A+++LV +H QG+QI
Sbjct: 85 NNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHDQGEQI 144
Query: 129 TRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQ 188
TRTH ++ID DLSR EKLLG LGG+FSK WKPKK I GP++TRDDS R+ +HLE+
Sbjct: 145 TRTHHKAVEIDHDLSRGEKLLGSLGGMFSKTWKPKKTRPINGPVVTRDDSPTRRVNHLEK 204
Query: 189 RHKLGLSDHP-PQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGT 247
R KLGL+ P QS R+ E A Q+VEMEKAKQDDGLSDLS+IL ELK MAVDMG+
Sbjct: 205 REKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGS 264
Query: 248 EIDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283
EI++Q K L D DELNFR++ +N R RRLLGK
Sbjct: 265 EIEKQNKGLDHLHDDVDELNFRVQQSNQRGRRLLGK 300
>AT1G13890.1 | chr1:4751581-4752844 FORWARD LENGTH=264
Length = 263
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/215 (57%), Positives = 160/215 (74%), Gaps = 1/215 (0%)
Query: 69 NDFRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQI 128
N F D+GG+++Q+ +ELE YA YKAEETT+ V C++IAE++R +++L +HQQG+QI
Sbjct: 50 NGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQGEQI 109
Query: 129 TRTHMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQ 188
RTH M +D+D+DLSR EKLL +LGG+FSK WKPKK I GPM+T D + +H E+
Sbjct: 110 NRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEE 169
Query: 189 RHKLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGTE 248
R KLGL +S+++ +PT+ALQKVE EKAKQDDGLSDLS+IL +LK MAVDMG+E
Sbjct: 170 REKLGLG-AKGRSSSQPALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSE 228
Query: 249 IDRQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283
ID+Q KAL D DELN R++GAN RAR LL K
Sbjct: 229 IDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263
>AT5G07880.1 | chr5:2515587-2516694 REVERSE LENGTH=252
Length = 251
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 149/213 (69%), Gaps = 4/213 (1%)
Query: 71 FRDTGGVEAQSVQELEGYAAYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQITR 130
+ +GG E Q+VQELE YA Y +EETT+ VQGC+++AEE+R ASK+LV +++QG QITR
Sbjct: 43 LKPSGGKENQTVQELESYAVYNSEETTKTVQGCLKVAEEIRCDASKTLVMLNEQGDQITR 102
Query: 131 THMMTLDIDQDLSRSEKLLGDLGGIFSKKWKPKKNGEIRGPMLTRDDSFIRKGSHLEQRH 190
TH T+D+D LSR EK+LG LGG+FS+ WKPKK+ I GP++T+ DS RK L+ R
Sbjct: 103 THQKTVDLDHHLSRGEKILGRLGGVFSRTWKPKKSRSITGPVITKGDSPKRKVIDLKTRE 162
Query: 191 KLGLSDHPPQSNARQFHSEPTSALQKVEMEKAKQDDGLSDLSNILTELKGMAVDMGTEID 250
KLGL +P + E A QK ++ AKQD+ L+DLS +L ELK MAVDMGT I+
Sbjct: 163 KLGL--NPSLKPKSKTLPEAVDAYQKTQI--AKQDEALTDLSALLGELKNMAVDMGTAIE 218
Query: 251 RQTKALGDSEKDYDELNFRIKGANTRARRLLGK 283
RQT L + + DELN+R+K +N RAR LL K
Sbjct: 219 RQTNELDHLQDNADELNYRVKQSNQRARYLLRK 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,198,811
Number of extensions: 188917
Number of successful extensions: 539
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)