BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0324700 Os02g0324700|AK060405
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23150.1 | chr1:8206948-8207461 FORWARD LENGTH=142 86 8e-18
AT1G70780.1 | chr1:26695462-26695975 REVERSE LENGTH=141 83 5e-17
AT5G37730.1 | chr5:14986141-14986884 REVERSE LENGTH=183 81 2e-16
AT2G27830.1 | chr2:11860734-11861306 FORWARD LENGTH=191 54 2e-08
>AT1G23150.1 | chr1:8206948-8207461 FORWARD LENGTH=142
Length = 141
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%)
Query: 24 RMLVTVTVLGSAGPLRFLIDEGETVAGLIRAALRCYAREGRMPLLGADAAGFLLYTANGG 83
R+L++VT LGSAGP+RF+ +EG+ VA +I AL+CYAREGR+P+LG+D F+ Y G
Sbjct: 15 RILISVTFLGSAGPIRFVANEGDLVASVIDTALKCYAREGRLPILGSDFNDFVFYCPMVG 74
Query: 84 SDALSADEKIYFNGCRSFLL 103
ALS E I G R+F+L
Sbjct: 75 PGALSPWEAIGSVGVRNFML 94
>AT1G70780.1 | chr1:26695462-26695975 REVERSE LENGTH=141
Length = 140
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%)
Query: 24 RMLVTVTVLGSAGPLRFLIDEGETVAGLIRAALRCYAREGRMPLLGADAAGFLLYTANGG 83
R+L++VTVLGSAGP+RF+ E + VA +I AL+ YAREGR+PLLG+D FLLY G
Sbjct: 17 RILISVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPLLGSDFNDFLLYCPMVG 76
Query: 84 SDALSADEKIYFNGCRSFLLWQK 106
+ALS + I G R+F+L +K
Sbjct: 77 PEALSTWDAIGSLGARNFMLCRK 99
>AT5G37730.1 | chr5:14986141-14986884 REVERSE LENGTH=183
Length = 182
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 24 RMLVTVTVLGSAGPLRFLIDEGETVAGLIRAALRCYAREGRMPLLGADAAGFLLYTANGG 83
++LV+V VLGS GP+RFL +E + V+ I L+ YAR+GR+P+LG D F+ Y+ N G
Sbjct: 17 KLLVSVNVLGSVGPIRFLANEDDEVSSAINTTLKAYARQGRIPVLGFDVDNFIFYSINAG 76
Query: 84 SDALSADEKIYFNGCRSFLLWQKAAR 109
+ L EKI +FL+ +K R
Sbjct: 77 FNTLHPQEKIGSMDVTNFLMCKKEPR 102
>AT2G27830.1 | chr2:11860734-11861306 FORWARD LENGTH=191
Length = 190
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 23 ARMLVTVTVLGSAGPLRFLIDEGETVAGLIRAALRCYAREGRMPLLG-ADAAGFLLYTAN 81
++L+ VTV GS G ++ +I TV+ LI AA+R Y +E R P L ++ + F L+ +
Sbjct: 70 TKLLLNVTVQGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQ 129
Query: 82 GGSDALSADEKIYFNGCRSFLL 103
+++ DEK+ G R+F L
Sbjct: 130 FSLESIVRDEKLISLGSRNFFL 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,807,353
Number of extensions: 101297
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)