BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0324300 Os02g0324300|AK068494
(310 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25682.1 | chr1:9002532-9004550 REVERSE LENGTH=311 443 e-125
AT1G25988.1 | chr1:9016252-9017450 REVERSE LENGTH=181 115 2e-26
AT1G17130.2 | chr1:5854264-5856472 FORWARD LENGTH=339 84 7e-17
AT3G43250.1 | chr3:15216713-15217462 FORWARD LENGTH=250 68 6e-12
AT2G32050.1 | chr2:13637879-13638643 REVERSE LENGTH=255 62 5e-10
AT2G29430.1 | chr2:12619700-12619954 FORWARD LENGTH=85 49 3e-06
>AT1G25682.1 | chr1:9002532-9004550 REVERSE LENGTH=311
Length = 310
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 201/282 (71%), Positives = 247/282 (87%)
Query: 1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGG 60
MS+L+AARADNFYYPPEW+P +G LNKF GQH LRERA+K+ +GIL+IRFEMP+NIWCGG
Sbjct: 1 MSTLSAARADNFYYPPEWTPDQGSLNKFQGQHPLRERAKKIGEGILVIRFEMPYNIWCGG 60
Query: 61 CNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRK 120
C+SMIAKGVRFNAEKKQVGNYYSTKIWSF MKSPCCK EIVIQTDP+N EYVI SGAQ+K
Sbjct: 61 CSSMIAKGVRFNAEKKQVGNYYSTKIWSFAMKSPCCKHEIVIQTDPQNCEYVITSGAQKK 120
Query: 121 TEDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSD 180
E+Y+ EDAET+ L A++E+ KLADP Y+LEHQE DL+KKK AEP+LVRLQR+SD+RH+D
Sbjct: 121 VEEYEAEDAETMELTAEQEKGKLADPFYRLEHQEVDLQKKKAAEPLLVRLQRVSDARHAD 180
Query: 181 DYALNRALRDRLRSQKKRVAEEKRSARKMGLGVRLLPPSAEDATAAASVKFASKFEKSRR 240
DY+LN+ALR +LR +KRVAEE+ ++RK+GLG+RLLP S ED AA++VKF SKF+K+R+
Sbjct: 181 DYSLNKALRAQLRRHRKRVAEEETASRKLGLGIRLLPKSEEDIKAASNVKFKSKFDKNRK 240
Query: 241 DKRAAIKAASIFPESSSSTSKNKLDLALKRRNIKAGAASALM 282
DKRA I A+SIFPESS S+SK +++L KRR I A +AS+L+
Sbjct: 241 DKRALIHASSIFPESSYSSSKKRMELEAKRRKISAASASSLL 282
>AT1G25988.1 | chr1:9016252-9017450 REVERSE LENGTH=181
Length = 180
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 67/78 (85%)
Query: 103 QTDPKNTEYVIISGAQRKTEDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKE 162
+TDP+N EYVI SGAQ+K E+Y+ EDAET+ L A++E+ KLADP Y+LEHQE DL+KKK
Sbjct: 27 KTDPQNCEYVITSGAQKKVEEYEAEDAETMELTAEQEKGKLADPFYRLEHQEVDLQKKKA 86
Query: 163 AEPVLVRLQRLSDSRHSD 180
AEP LVRLQR+SD+RH+D
Sbjct: 87 AEPFLVRLQRVSDARHAD 104
>AT1G17130.2 | chr1:5854264-5856472 FORWARD LENGTH=339
Length = 338
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 24/213 (11%)
Query: 11 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70
N YYPP++ P K +R R+ + +R +P ++ CG C + I KG +
Sbjct: 8 NKYYPPDFDPAK------------LQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTK 55
Query: 71 FNAEKKQV---------GNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRKT 121
FN+ K+ V Y +I+ F K C E+ ++TDP+N++Y++ SGA R
Sbjct: 56 FNSRKEDVIGENFSFDVQTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNY 115
Query: 122 EDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSDD 181
E + ED E + +++ D M LE++ D K++ + L ++ + SRH+
Sbjct: 116 EPWRAEDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMK-SRHATV 174
Query: 182 Y--ALNRALRDRLRSQKKRVAEEKRSARKMGLG 212
A+ AL+ + KR+ EE + K G
Sbjct: 175 SVDAMLEALQRTGAEKVKRIEEEDEAVIKSIFG 207
>AT3G43250.1 | chr3:15216713-15217462 FORWARD LENGTH=250
Length = 249
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 11 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70
N YYPP++ PKK H + + +K IRF +P + C C + +++G +
Sbjct: 8 NKYYPPDFDPKK-----IHRIKKPKNQQKK-------IRFMLPVRVRCNTCGNYMSEGTK 55
Query: 71 FNAEKKQV--GNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGA 117
FN ++ V Y KI F +K C E+ I+TDPKN Y + SGA
Sbjct: 56 FNCRQEDVITETYLGLKIHRFYIKCTKCLAELTIKTDPKNHSYTVESGA 104
>AT2G32050.1 | chr2:13637879-13638643 REVERSE LENGTH=255
Length = 254
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 11 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70
N YYPP + PK+ R RK IR +P I C C + +++G +
Sbjct: 8 NKYYPPNFDPKQ------------IPRIRKPKNQQRKIRSMVPLRIRCNTCGNYMSEGTK 55
Query: 71 FNA-EKKQVG-NYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRKTEDYDVED 128
N E+ +G Y KI F K C E++++TDPKN+ YV SGA T YD +
Sbjct: 56 INCREENVIGETYLGIKIHRFYFKCSKCCTELILKTDPKNSSYVAESGA---TCVYDQHE 112
Query: 129 AE 130
E
Sbjct: 113 EE 114
>AT2G29430.1 | chr2:12619700-12619954 FORWARD LENGTH=85
Length = 84
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 50 FEMPFNIWCGGCNSMIAKGVRFNAEKKQV--GNYYSTKIWSFTMKSPCCKQEIVIQTDPK 107
+P + C C+++++KG +F + + V Y KI+ F ++ E+ +TDPK
Sbjct: 8 LSLPMRLQCNNCDNIMSKGTKFTSRVEDVIGETYLGIKIFRFQIQCTNGSHEMKFRTDPK 67
Query: 108 NTEYVIISGAQR 119
N +++I SGA R
Sbjct: 68 NADFIIESGATR 79
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,035,883
Number of extensions: 244022
Number of successful extensions: 1220
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 6
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)