BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0320300 Os02g0320300|AK067650
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53520.1  | chr1:19976485-19977915 REVERSE LENGTH=288          181   5e-46

>AT1G53520.1 | chr1:19976485-19977915 REVERSE LENGTH=288
          Length = 287

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 140/230 (60%), Gaps = 8/230 (3%)

Query: 55  RRSAAAARRLPIPSAAGGGTVGDA--FVIEDTTNVKFPREIAVPGYTEPLVILGTGYREK 112
            R      R+ + SAA   +VG+A  +  E  T+VKF R + +PG + PL +LGTG+REK
Sbjct: 59  NRHCGEISRVIVKSAAS--SVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREK 116

Query: 113 FF----LKIYAAAFYVDCSIGVDTMRWREKVGIETFDASSVFDSIFKAPVVKSLSIILVR 168
            F    +K+YAA +YV+ SI      W  +   E    SS+F SIF+A   KSL I+LVR
Sbjct: 117 KFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVR 176

Query: 169 DVDGKTFVKALDDIIARQIKKPSAEEEQSLSTFQKTFLGRSLKQGTTVYLTWLEPSKLLI 228
           DVDGKTF  ALD+ I+ +IK PS+E+  +LSTF+  F  R L +G+ + LTW+  S +L+
Sbjct: 177 DVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLTWINTSNMLV 236

Query: 229 SIAGNQDPCQVDAEITSATVNYALYDGFLGSSPVSPTLRSSTALLLEAIL 278
           S++    P  VDA I S  V  AL+D F G SPVSPTL+SS A  L   L
Sbjct: 237 SVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,295,536
Number of extensions: 219301
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)