BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0319300 Os02g0319300|AK105036
(77 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19880.2 | chr4:10784691-10786376 REVERSE LENGTH=383 145 3e-36
AT5G45020.1 | chr5:18169206-18170488 FORWARD LENGTH=326 144 1e-35
AT5G44990.1 | chr5:18163370-18164768 FORWARD LENGTH=351 117 1e-27
AT5G44000.1 | chr5:17702231-17703934 REVERSE LENGTH=400 64 2e-11
>AT4G19880.2 | chr4:10784691-10786376 REVERSE LENGTH=383
Length = 382
Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 72/76 (94%)
Query: 1 VYAVHFKCNKRLLREYPNLFNYTKDIYQIPGISSTVNMEHIRKHYYGSHPSINPYGIIPA 60
VYAVHFKCNK+L+REYPNLFNYTKDI+QIPG+SSTVNM HI++HYYGSHPSINP+GIIP
Sbjct: 306 VYAVHFKCNKKLIREYPNLFNYTKDIFQIPGMSSTVNMNHIKQHYYGSHPSINPFGIIPH 365
Query: 61 GPNIDYNAPHDRERFS 76
GPNIDY +PHDR RFS
Sbjct: 366 GPNIDYTSPHDRHRFS 381
>AT5G45020.1 | chr5:18169206-18170488 FORWARD LENGTH=326
Length = 325
Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 74/77 (96%)
Query: 1 VYAVHFKCNKRLLREYPNLFNYTKDIYQIPGISSTVNMEHIRKHYYGSHPSINPYGIIPA 60
VYAVHFKCNKRLLREYPN+FNY KDIYQI G+SSTVNMEHI++HYYGSHP+INP+GIIP
Sbjct: 249 VYAVHFKCNKRLLREYPNIFNYIKDIYQIHGMSSTVNMEHIKQHYYGSHPTINPFGIIPH 308
Query: 61 GPNIDYNAPHDRERFSA 77
GPNIDY++PHDR+RFS+
Sbjct: 309 GPNIDYSSPHDRDRFSS 325
>AT5G44990.1 | chr5:18163370-18164768 FORWARD LENGTH=351
Length = 350
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 64/76 (84%)
Query: 1 VYAVHFKCNKRLLREYPNLFNYTKDIYQIPGISSTVNMEHIRKHYYGSHPSINPYGIIPA 60
YAV FKC+KRL+REY +LFNYTKDIYQI G+SSTV M+HI+++YYGS PSINP II
Sbjct: 246 AYAVIFKCDKRLVREYYHLFNYTKDIYQIAGMSSTVKMDHIKQNYYGSFPSINPLEIIAH 305
Query: 61 GPNIDYNAPHDRERFS 76
GPNIDY+ PHDR RFS
Sbjct: 306 GPNIDYSLPHDRHRFS 321
>AT5G44000.1 | chr5:17702231-17703934 REVERSE LENGTH=400
Length = 399
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 1 VYAVHFKCNKRLLREYPNLFNYTKDIYQIPGISSTVNMEHIRKHYYGSHPSINPYGIIPA 60
VY + FKC K+ L EYPNL+ Y ++IYQIPG+++T ++ I YY + +N GI PA
Sbjct: 311 VYNILFKCTKKKLVEYPNLYGYLREIYQIPGVAATCDISAIMDGYYKTLFPLNASGIQPA 370
Query: 61 ----GPNIDYNAPHDRE 73
G PH+R+
Sbjct: 371 ISSSGDQDSLWRPHNRD 387
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,958,691
Number of extensions: 73110
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 4
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)