BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0318100 Os02g0318100|J065021H06
(192 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22370.1 | chr3:7906890-7908416 FORWARD LENGTH=355 308 1e-84
AT3G27620.1 | chr3:10229289-10230595 REVERSE LENGTH=330 306 5e-84
AT3G22360.1 | chr3:7904156-7905384 FORWARD LENGTH=326 303 3e-83
AT1G32350.1 | chr1:11667237-11668569 REVERSE LENGTH=319 289 5e-79
AT5G64210.1 | chr5:25683965-25685664 REVERSE LENGTH=354 288 8e-79
AT4G22260.1 | chr4:11769967-11772350 REVERSE LENGTH=352 52 1e-07
>AT3G22370.1 | chr3:7906890-7908416 FORWARD LENGTH=355
Length = 354
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 141/183 (77%), Positives = 158/183 (86%)
Query: 10 QRRYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69
QRRYGCRAMMLET LH +SLRRFE SGGWI+ALLEEAENERMHLMTFME
Sbjct: 172 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 231
Query: 70 VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129
V++P+WYERALV+ VQG FFNAY YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G
Sbjct: 232 VAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 291
Query: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189
I++VPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNH+ASDIHYQG L+E AP+
Sbjct: 292 IENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPI 351
Query: 190 GYH 192
GYH
Sbjct: 352 GYH 354
>AT3G27620.1 | chr3:10229289-10230595 REVERSE LENGTH=330
Length = 329
Score = 306 bits (783), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 139/183 (75%), Positives = 160/183 (87%)
Query: 10 QRRYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69
QRRYGCRA+MLET +H +SLRRFE SGGWI+ALLEEAENERMHLMTFME
Sbjct: 147 QRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLMTFME 206
Query: 70 VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129
V++P+WYERALV++VQG FFNAYL Y++SP+FAHR+VGYLEEEA+HSYTEFL++LD G
Sbjct: 207 VAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGN 266
Query: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189
I++VPAPAIA+DYWRL ADATLRDVVMVVRADEAHHRDVNHYASDIHYQGH L+E AP+
Sbjct: 267 IENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHELKEAPAPI 326
Query: 190 GYH 192
GYH
Sbjct: 327 GYH 329
>AT3G22360.1 | chr3:7904156-7905384 FORWARD LENGTH=326
Length = 325
Score = 303 bits (777), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 141/183 (77%), Positives = 157/183 (85%)
Query: 10 QRRYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69
QRRYGCRAMMLET +H +SLRRFE SGGWI+ALLEEAENERMHLMTFME
Sbjct: 143 QRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 202
Query: 70 VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129
V++P WYERALV+AVQG FFNAY YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G
Sbjct: 203 VAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGN 262
Query: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189
I++VPAPAIAIDYWRL ADATLRDVVMVVRADEAHHRDVNHYASDIHYQG L+E AP+
Sbjct: 263 IENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPI 322
Query: 190 GYH 192
GYH
Sbjct: 323 GYH 325
>AT1G32350.1 | chr1:11667237-11668569 REVERSE LENGTH=319
Length = 318
Score = 289 bits (740), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 131/187 (70%), Positives = 155/187 (82%)
Query: 6 QFGCQRRYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLM 65
Q QR++ C AM+LET LHL+SLRRFEHSGGWI+ALLEEAENERMHLM
Sbjct: 132 QLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLM 191
Query: 66 TFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDL 125
TF+E+SQP+WYERA+V VQG FFNAY +Y++SP+ AHRI GYLEEEAV+SYTEFL+D+
Sbjct: 192 TFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDI 251
Query: 126 DAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREV 185
DAGK ++ PAPAIAIDYWRLP DATLRDVV V+RADEAHHRD+NHYASDI ++GH L+E
Sbjct: 252 DAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEA 311
Query: 186 AAPLGYH 192
AP+GYH
Sbjct: 312 PAPIGYH 318
>AT5G64210.1 | chr5:25683965-25685664 REVERSE LENGTH=354
Length = 353
Score = 288 bits (738), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 131/183 (71%), Positives = 153/183 (83%)
Query: 10 QRRYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69
QRRYGCRAMMLET LHL+S+R+FEHSGGWI+ALLEEAENERMHLMT ME
Sbjct: 171 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMME 230
Query: 70 VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129
+ +P+WYER LV+ VQG FFN++ Y++SPR AHR+VGYLEEEA+HSYTEFL+D+D GK
Sbjct: 231 LVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGK 290
Query: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189
I++V APAIAIDYWRLP DATL+DVV V+RADEAHHRDVNH+ASDI QG LRE AAP+
Sbjct: 291 IENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPI 350
Query: 190 GYH 192
GYH
Sbjct: 351 GYH 353
>AT4G22260.1 | chr4:11769967-11772350 REVERSE LENGTH=352
Length = 351
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 12 RYGCRAMMLETXXXXXXXXXXXXLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVS 71
R R +LET LH+ + +++ E+ NE HL+ E+
Sbjct: 127 RTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLLIMEELG 186
Query: 72 -QPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGKI 130
W++R L + ++ + Y+LSPR A+ +E A +Y +FL+ ++
Sbjct: 187 GNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLK-ASGEEL 245
Query: 131 DDVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 165
++PAP IA+ Y+ R P L DV + +R DEA H
Sbjct: 246 KNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEH 299
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,746,024
Number of extensions: 135309
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 6
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)