BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0317000 Os02g0317000|Os02g0317000
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36850.1  | chr2:15454935-15469666 REVERSE LENGTH=1905          87   3e-18
AT3G07160.1  | chr3:2265142-2279383 REVERSE LENGTH=1891            56   5e-09

>AT2G36850.1 | chr2:15454935-15469666 REVERSE LENGTH=1905
          Length = 1904

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 77/148 (52%), Gaps = 45/148 (30%)

Query: 1   MEQNLDPSSDGQGVYQFKTGLASVIKFQ-----------QNDMQVLWNFYQEYNSRHRVA 49
           M QNLDP+SDG+GV QFKTGL SVIK +             D++ LW FY+ Y  RHRV 
Sbjct: 77  MAQNLDPNSDGRGVLQFKTGLMSVIKQKLAKRDGASIDRDRDIERLWEFYKLYKRRHRVD 136

Query: 50  DMQREQERLLESRTFSPALESKRIQQRVGFEEQSLHRLRRHRLEMGSRAVEMRKFYATLR 109
           D+Q+E+++  ES T             VG                    ++MRK +ATLR
Sbjct: 137 DIQKEEQKWRESGT--------TFSSNVG------------------EILKMRKVFATLR 170

Query: 110 ALLDVLEIF--------VGKSPSDKLGR 129
           AL++VLE+         VG+S  D+LGR
Sbjct: 171 ALIEVLEVLSRDADPNGVGRSIRDELGR 198



>AT3G07160.1 | chr3:2265142-2279383 REVERSE LENGTH=1891
          Length = 1890

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 11/87 (12%)

Query: 1   MEQNLDPSSDGQGVYQFKTGLASVIKFQ-----------QNDMQVLWNFYQEYNSRHRVA 49
           + QNLDP+S+G+GV QFKTGL SVIK +             D+  L  FY+ Y  ++ V 
Sbjct: 74  LAQNLDPNSEGRGVLQFKTGLMSVIKQKLAKREVGTIDRSQDILRLQEFYRLYREKNNVD 133

Query: 50  DMQREQERLLESRTFSPALESKRIQQR 76
            ++ E+++L ES  F+  LE K ++++
Sbjct: 134 TLKEEEKQLRESGAFTDELERKTVKRK 160



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,613,653
Number of extensions: 89178
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)