BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0316200 Os02g0316200|AK073932
         (424 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03030.1  | chr4:1335942-1337270 REVERSE LENGTH=443            263   2e-70
AT3G63220.2  | chr3:23357540-23358598 REVERSE LENGTH=353           52   4e-07
AT1G16250.1  | chr1:5557214-5558697 FORWARD LENGTH=384             50   2e-06

>AT4G03030.1 | chr4:1335942-1337270 REVERSE LENGTH=443
          Length = 442

 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/414 (38%), Positives = 210/414 (50%), Gaps = 24/414 (5%)

Query: 27  SIIPGLPDDVAAVILCLLTFPD----QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 82
           ++IPGL +DV  +IL  + +P     +                                 
Sbjct: 37  TLIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNNLSHL 96

Query: 83  XCLFPTDPSLASPILLDPAAPTAWWSLPPIPCSPQHYGLANFAAVAVGGQIYVLGGSRFD 142
            C+FP DPS++ P L DP    +W SLP +PC+P  YGL NF AVA+G  +YVLGGS FD
Sbjct: 97  LCIFPQDPSISPPFLFDPVT-LSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGSAFD 155

Query: 143 ARSYPLDNPSPSAAAYRLDLALSRHRWERLPDMRVPRGSFACA--PAPSGGVIVAGGGSR 200
            RSYPLD P P+++ +R     S   WERL  M  PRGSFACA  P   G +IVAGGGSR
Sbjct: 156 TRSYPLDVPLPTSSVFRYSFVKS--VWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGSR 213

Query: 201 HPTFPSYGSRTSGVELYDXXXXXXXXXXXMPRDRAGCVGFVA------HGAGDGREDEFW 254
           H  F + GSR S VE+YD           +PR RAGCVGF+           +GR  EFW
Sbjct: 214 HTLFGAAGSRMSSVEMYDVEKDEWRVMNELPRFRAGCVGFLVENEKEKEKEEEGR--EFW 271

Query: 255 XXXXXXXXXXXXXXXPSDVYCRDAVALGL---WSGKWREIGDMWEEWERERLGPVAVISA 311
                          P D Y +DAV + L      KWR +GDMW E ER +LG +  +  
Sbjct: 272 VMGGYGGSRTVSGILPVDEYYKDAVVMDLRVDGGEKWRVVGDMWGEEERPKLGKIVAV-- 329

Query: 312 EDGRVTEVFMLDGHDIFRYNFSSNSWSKEATLRRKIPSTQSCGFIAMNGELYVLTSAK-L 370
            D      FMLD   I RY    N W KE+++ +K    +  GF+A+NGEL+V+      
Sbjct: 330 -DCGKPVFFMLDKDWILRYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELHVMILLDGY 388

Query: 371 PVETSSPWKQSKKRLALEFQVYNPAAKMWRVLTTHPPVNVPIDFRTAALCTVEL 424
            +  +   +Q +K  +L   +Y+P  K WR + + PP N  +DFRT  +CT+ L
Sbjct: 389 NLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTIRL 442



>AT3G63220.2 | chr3:23357540-23358598 REVERSE LENGTH=353
          Length = 352

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 106 WWSLPPIPCSPQHYGLANFAAVAVGGQIYVLGGSRFDARSYPLDNPSPSAAAYRLDLALS 165
           W +LP +P   +H  LA+F AV   G ++VLGG          D+    A          
Sbjct: 86  WLTLPLLPSRIRH--LAHFGAVTTAGMLFVLGGGSDAVSPVTGDHDGTFATDQVWSYDFV 143

Query: 166 RHRWERLPDMRVPRGSFACAPAPSGGVIVAGGGSRHPTFPSYGSRTSGVELYD 218
           + +W     M VPR  FAC     G ++VAGG      F +     SG E+YD
Sbjct: 144 QRQWTPRASMLVPRAMFACC-VLQGKIVVAGG------FTTCRKSISGAEMYD 189



>AT1G16250.1 | chr1:5557214-5558697 FORWARD LENGTH=384
          Length = 383

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 75/220 (34%), Gaps = 12/220 (5%)

Query: 27  SIIPGLPDDVAAVILCLLTFPDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLF 86
           SIIPGLPDD+A  + C+                                           
Sbjct: 7   SIIPGLPDDLA--LRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFV 64

Query: 87  PTDPSLASPILLDPAAPTAWWSLPPIPCSPQHYGLANFAAVAVGGQIYVLGGSRF-DARS 145
            T+ S    +  DP A   W  LP        +  + FA V V   + V+GG       S
Sbjct: 65  LTERSKNQWVAYDPEA-DRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSS 123

Query: 146 YPLDNPSPSAAAYRLDLALSRHRWERLPDMRVPRGSFACAPAPSGGVIVAGGGSRHPTFP 205
           +P   P  +    R D    + +W+ +  MR PR  FAC    SG V VAGG +      
Sbjct: 124 FPHQKPVVTKDVMRFDPF--KKQWKMVASMRTPRTHFACTSV-SGKVYVAGGRNL----- 175

Query: 206 SYGSRTSGVELYDXXXXXXXXXXXMPRDRAGCVGFVAHGA 245
           ++       E+YD           MPR +  C G    G 
Sbjct: 176 THSRGIPSAEVYDPVADRWEELPAMPRPQMDCSGLSYRGC 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,644,989
Number of extensions: 340415
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 3
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)