BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0312500 Os02g0312500|AK061035
         (166 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28510.1  | chr1:10024036-10025939 FORWARD LENGTH=172          176   7e-45
AT3G58150.1  | chr3:21532947-21534072 REVERSE LENGTH=195          147   3e-36

>AT1G28510.1 | chr1:10024036-10025939 FORWARD LENGTH=172
          Length = 171

 Score =  176 bits (445), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 111/153 (72%)

Query: 1   MILPLAKLGTLALKTMSKPIAIRLKTEASRHPQFRQLIINLAQTNHRVSTNIQRRIYGHS 60
           M+LPL KLGTLA+KT+SKP+A +LK +A  HP+FRQ IIN AQ NHR++T +QRRIYGH+
Sbjct: 1   MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query: 61  TKVEIRPLNEEKAVQAAADLIGELFVFSVAGAAVIFEVQXXXXXXXXXXXXXXXXXXXLR 120
           T VEIRPL+EEKAVQAA DLIGE+F+F V GA V+FEVQ                   LR
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELR 120

Query: 121 QKEDQLAREIEIVKQKLGEIERQANSRGLSGVL 153
            K+++L +++  +K KL E+E+ A +RGLSG+ 
Sbjct: 121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIF 153



>AT3G58150.1 | chr3:21532947-21534072 REVERSE LENGTH=195
          Length = 194

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 94/137 (68%)

Query: 1   MILPLAKLGTLALKTMSKPIAIRLKTEASRHPQFRQLIINLAQTNHRVSTNIQRRIYGHS 60
           M+LPL KLGTLAL+T+ KPIA +LK EA  +P+FRQ IIN+AQ NHR +T +QRR  G  
Sbjct: 12  MVLPLLKLGTLALRTICKPIANQLKKEAGVNPKFRQFIINIAQANHRFTTKLQRRASGRI 71

Query: 61  TKVEIRPLNEEKAVQAAADLIGELFVFSVAGAAVIFEVQXXXXXXXXXXXXXXXXXXXLR 120
           T   IRPLNEE+AVQAAADL+GELF F+VAGAA+++EVQ                    R
Sbjct: 72  TDAVIRPLNEERAVQAAADLLGELFAFTVAGAALVYEVQRNARGEAKKEEKRQQELAEFR 131

Query: 121 QKEDQLAREIEIVKQKL 137
           +K +++  EIE +KQ+ 
Sbjct: 132 RKHEKMENEIEEMKQRC 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,411,399
Number of extensions: 66868
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)