BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0304900 Os02g0304900|AK059764
(245 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 80 1e-15
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 79 2e-15
AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212 67 1e-11
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 63 1e-10
AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222 60 1e-09
AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229 59 3e-09
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 1 MDSDHWISRLMAAKRQYALQRAQNXXXXXXXXXXXXXXXXXLDRYGYXXXXXXXXXXXXF 60
MDSD W RL +A R+Y L G+ F
Sbjct: 1 MDSDSWSDRLASATRRYQLAFPSRSDTF----------------LGFEEIDGEEEFREEF 44
Query: 61 PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLF 114
CP+C + DI SLC H++++HP E+K CPVC+ R+ D++ HITLQH+ +F
Sbjct: 45 ACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIF 98
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 22/117 (18%)
Query: 1 MDSDHWISRLMAAKRQYALQ---RAQNXXXXXXXXXXXXXXXXXLDRYGYXXXXXXXXXX 57
MDSD W RL +A R+Y L R+ N G+
Sbjct: 1 MDSDSWSDRLASASRRYQLDFLSRSDNF-------------------LGFEEIEGEDDFR 41
Query: 58 XXFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLF 114
+ CP+C + DI SLC H++++HP ++K CP+C+ ++S D++ HITLQH+ +F
Sbjct: 42 EEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMF 98
>AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212
Length = 211
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 60 FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLF 114
F CP+C ++ DI LC H++ HP E+K CPVC+ ++ D++ HIT QH +F
Sbjct: 43 FMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVF 97
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 60 FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFXXXXX 119
F CP+C E +DI LC H++DEH ESK CPVCS ++ D++ H
Sbjct: 35 FACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHKRFTMGR------- 87
Query: 120 XXXXXVAVPSNHALSLGGRDLQETYLKVLL 149
+N LSL ++L+E L+ LL
Sbjct: 88 -KRKSRKSGTNSTLSLLRKELREGDLQRLL 116
>AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222
Length = 221
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 60 FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQH 110
+PCP+C D+D+ LC H+++EH E+ CPVCS R+ ++DHIT H
Sbjct: 47 YPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHH 97
>AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229
Length = 228
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 14/69 (20%)
Query: 60 FPCPYCYEDHDITSLCAHLEDEHPFESK--------------VVACPVCSARISKDLLDH 105
+PCP+C +D+D+ LC H+++EH ++ + CPVCS R+ ++DH
Sbjct: 43 YPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVCSRRVKMHMVDH 102
Query: 106 ITLQHSYLF 114
IT QH +F
Sbjct: 103 ITTQHRDVF 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,473,644
Number of extensions: 91723
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 6
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)