BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0299300 Os02g0299300|AK066972
         (289 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53050.2  | chr5:21510534-21513432 REVERSE LENGTH=397          324   3e-89

>AT5G53050.2 | chr5:21510534-21513432 REVERSE LENGTH=397
          Length = 396

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 191/221 (86%)

Query: 1   MAKDALALMDHLGWRKAHVFGHSMGSMIASKLAAIAPERVASLALLNTTGGGYQCIPKID 60
           MA D+++L+DHLGW+KAH+ GHSMG+MIA KLAA+APERV SLALLN TGGG++C PK+D
Sbjct: 106 MANDSISLLDHLGWKKAHIIGHSMGAMIACKLAAMAPERVLSLALLNVTGGGFECFPKLD 165

Query: 61  WQTISLACRFLRARTPEQRAGVDLDVHYTREYLDEIVGSNTRRQMLYQEYVKGLSSCGMQ 120
            +++S+A RFL+A+TPEQRA VDLD HY+++YL+E VG+NTRR +LYQ+YVKG+S  GMQ
Sbjct: 166 RKSLSIAIRFLKAKTPEQRAAVDLDTHYSKDYLEESVGTNTRRAILYQQYVKGISETGMQ 225

Query: 121 SRHGYEGQLNACWTHKLTQKELDRIRSSGFLILVIHGRDDVVAQLYHARRLAEKLQPAAK 180
           S++G++GQ+NACW HK+T+ E++ IRS+GFL+ VIHGR DV+AQ+ +ARRLA++L P A+
Sbjct: 226 SKYGFDGQINACWLHKITKVEIELIRSAGFLVSVIHGRHDVIAQICYARRLAQRLYPVAR 285

Query: 181 LVELHGGHLVSHERTAEVNMSLMEMIKASKSNTDQGEWSNL 221
           +V+LHGGHLVSHERT EVN +L+E+IKAS+      +W+NL
Sbjct: 286 MVDLHGGHLVSHERTEEVNKALLELIKASEMKKISTDWTNL 326



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,285,878
Number of extensions: 198387
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)