BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0293300 Os02g0293300|J090050D05
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12550.1 | chr3:3978669-3981372 FORWARD LENGTH=639 93 3e-20
AT4G01780.1 | chr4:767310-769246 FORWARD LENGTH=473 87 2e-18
AT3G48670.1 | chr3:18031240-18033615 FORWARD LENGTH=648 86 4e-18
AT1G13790.1 | chr1:4727438-4730229 FORWARD LENGTH=737 80 3e-16
AT1G15910.1 | chr1:5465951-5468723 FORWARD LENGTH=635 79 5e-16
AT4G00380.1 | chr4:167959-170448 FORWARD LENGTH=636 75 5e-15
AT5G59390.1 | chr5:23954934-23957151 FORWARD LENGTH=562 73 3e-14
AT3G29375.1 | chr3:11280151-11281829 FORWARD LENGTH=356 72 4e-14
AT1G80790.1 | chr1:30360280-30362856 FORWARD LENGTH=635 69 6e-13
AT4G01180.1 | chr4:501287-503394 REVERSE LENGTH=555 66 3e-12
AT2G16490.1 | chr2:7146000-7147296 REVERSE LENGTH=180 57 2e-09
>AT3G12550.1 | chr3:3978669-3981372 FORWARD LENGTH=639
Length = 638
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 55/68 (80%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++I+EDDEKL LK +LGD+ Y+AV ALLEINEYN SG Y+ SELWN +EDRKA+++E
Sbjct: 563 EVIDEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATLEEG 622
Query: 61 LQHVLEQW 68
+ +LEQW
Sbjct: 623 VNSLLEQW 630
>AT4G01780.1 | chr4:767310-769246 FORWARD LENGTH=473
Length = 472
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 57/75 (76%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++I++ DEKL LK LGD Y AVT ALLEINEYN SG Y+ +ELWN KED++A+++E
Sbjct: 395 EVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEG 454
Query: 61 LQHVLEQWKLRRRRR 75
+ +L+QW+ +R+R
Sbjct: 455 VTCLLDQWEKAKRKR 469
>AT3G48670.1 | chr3:18031240-18033615 FORWARD LENGTH=648
Length = 647
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 56/75 (74%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++I++ DEKL LK LGD Y AVT ALLEINEYN SG Y+ +ELWN K D+KA+++E
Sbjct: 570 EVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKATLEEG 629
Query: 61 LQHVLEQWKLRRRRR 75
+ +L+QW+ +R+R
Sbjct: 630 VTCLLDQWEKAKRKR 644
>AT1G13790.1 | chr1:4727438-4730229 FORWARD LENGTH=737
Length = 736
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 52/66 (78%)
Query: 3 INEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEALQ 62
+NE+DEKL L+++LG+EVY AVT AL E NEYN SG Y+V ELWN K++RKAS++E +
Sbjct: 661 LNEEDEKLQELRKELGEEVYAAVTQALKERNEYNGSGRYIVPELWNFKQNRKASIKEGVV 720
Query: 63 HVLEQW 68
+++ W
Sbjct: 721 YLVNSW 726
>AT1G15910.1 | chr1:5465951-5468723 FORWARD LENGTH=635
Length = 634
Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++++EDDE+L LK + G EV+ AV TAL+E+NEYNASG Y ELWN KE RKA+++E
Sbjct: 559 EVVDEDDEQLKKLKREWGKEVHNAVKTALVEMNEYNASGRYTTPELWNFKEGRKATLKEV 618
Query: 61 LQHVLEQWKLRRRRR 75
+ + K+ +R+R
Sbjct: 619 ITFISNDIKILKRKR 633
>AT4G00380.1 | chr4:167959-170448 FORWARD LENGTH=636
Length = 635
Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++++EDDE+L LK + G EV+ AV AL+E+NEYNASG Y SELWN KE RKA+++E
Sbjct: 560 EVVDEDDEQLKKLKREWGKEVHNAVKAALVEMNEYNASGRYPTSELWNFKEGRKATLKEV 619
Query: 61 LQHVLEQWKLRRRRR 75
+ + K +R+R
Sbjct: 620 ITFISTDIKNLKRKR 634
>AT5G59390.1 | chr5:23954934-23957151 FORWARD LENGTH=562
Length = 561
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++++E+DEKL LK Q G+EVY V LEI E+NASGSYV+ ELWN +E+RKA+M+EA
Sbjct: 479 RVVDENDEKLRTLKNQYGEEVYNEVVRTKLEIEEHNASGSYVILELWNYEENRKATMEEA 538
Query: 61 LQHVL 65
+L
Sbjct: 539 TDVML 543
>AT3G29375.1 | chr3:11280151-11281829 FORWARD LENGTH=356
Length = 355
Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 55/75 (73%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEA 60
++++E+DEKL L+E+ G+EV AV TAL E+NE+N SG +VV LWN+++ R A+++E
Sbjct: 275 EVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRVATLREV 334
Query: 61 LQHVLEQWKLRRRRR 75
+ H+ + K +R++
Sbjct: 335 IAHMTHEIKTLKRKK 349
>AT1G80790.1 | chr1:30360280-30362856 FORWARD LENGTH=635
Length = 634
Score = 68.6 bits (166), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 13 LKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEALQHVLEQWKLRR 72
L+E+ G+EV AV TAL E+NE+N SG Y V ELWN+K+ RKA+++E + ++ +Q K +
Sbjct: 571 LREEWGEEVKNAVKTALEELNEFNPSGRYSVPELWNSKQGRKATLKEVIDYITQQVKTLK 630
Query: 73 RRR 75
RRR
Sbjct: 631 RRR 633
>AT4G01180.1 | chr4:501287-503394 REVERSE LENGTH=555
Length = 554
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1 QIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQE 59
++++E+DEKL LK Q G+EVY V A LE+ E+NASGSY ELWN +E+RKA+++E
Sbjct: 474 RVVDENDEKLRMLKNQYGEEVYSEVVRAKLEMEEHNASGSYETEELWNYEENRKATIEE 532
>AT2G16490.1 | chr2:7146000-7147296 REVERSE LENGTH=180
Length = 179
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 2 IINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELWNNKEDRKASMQEAL 61
++NE+ E L LKE+ G++V+ + + +++EYNA G Y ELWN K+ K++++E +
Sbjct: 75 LVNEEYEPLKKLKEKWGEDVHNTLKITIKDMDEYNACGKYPTPELWNFKKKLKSTLKEVI 134
Query: 62 QHVLEQWKLRRRRR 75
+ +L K +R+R
Sbjct: 135 KFLLNDIKSLKRQR 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,632,897
Number of extensions: 51555
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 11
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)