BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0290600 Os02g0290600|AK100736
(596 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24260.1 | chr5:8234865-8237810 REVERSE LENGTH=747 813 0.0
AT2G47390.1 | chr2:19442278-19446253 REVERSE LENGTH=962 64 2e-10
AT4G14570.1 | chr4:8362586-8366525 FORWARD LENGTH=765 60 4e-09
AT5G36210.1 | chr5:14248202-14253272 REVERSE LENGTH=731 56 6e-08
>AT5G24260.1 | chr5:8234865-8237810 REVERSE LENGTH=747
Length = 746
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/600 (63%), Positives = 480/600 (80%), Gaps = 8/600 (1%)
Query: 1 MIAYVRDDELHTVGFSDGQTTQLTYGASESGKIHGLAEYIAQEEMERKMGFWWSPDSKHL 60
+AYVR+ ELH + QT QLT GA+ S HGLAEYIAQEEM+R+ G+WWS DSK +
Sbjct: 151 FLAYVRESELHVLNLLKNQTQQLTSGANGSTLSHGLAEYIAQEEMDRRNGYWWSLDSKFI 210
Query: 61 AFTEVDSSEIPLYRIMHQGKSSVGPDAQEDHAYPFAGAANVKVRLGVVSSHGG-EITWMD 119
A+TEVDSS+IPL+RIMHQGK SVG +AQEDHAYPFAGA N +RLGVVSS GG + TWM+
Sbjct: 211 AYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHAYPFAGALNSTLRLGVVSSAGGGKTTWMN 270
Query: 120 LLCGEPNSIHGDEEYLARVNWMHNSAIAVQVLNRTHSKLKLLKFDIASGKREVILEEEHD 179
L+CG + ++EYL RVNW+ + + VQVLNR+ SKLK++ FDI +G+ V+L EE D
Sbjct: 271 LVCGGRGNT--EDEYLGRVNWLPGNVLIVQVLNRSQSKLKIISFDINTGQGNVLLTEESD 328
Query: 180 TWITLHDCFTPLDKGVNSKHPGGFIWASEKTGFRHLYLHDKNGVCLGPLTQGDWMIDQIA 239
TW+TLHDCFTPL+K +S+ GGFIWASE+TGFRHLYL++ +G CLG +T G+WM++QIA
Sbjct: 329 TWVTLHDCFTPLEKVPSSRGSGGFIWASERTGFRHLYLYESDGTCLGAITSGEWMVEQIA 388
Query: 240 GVNESSGVIYFTGTLDGPLETNLYSTNLFPDWSLPLQVPKRLTHGTGRHSVILDHQLLRF 299
GVNE ++YFTGTLDGPLETNLY L + Q P RLTHG G+H V+LDHQ+ F
Sbjct: 389 GVNEPMSLVYFTGTLDGPLETNLYCAKLEAGNTSRCQ-PMRLTHGKGKHIVVLDHQMKNF 447
Query: 300 IDVYDSIKSPPVILLCSLLDGSVIMPLYEQPLTVQPLKKFQQLSPEIVQIEGKDG-TALY 358
+D++DS+ SPP + LCSL DG+V+ LYEQ +Q LK + PE VQI+ DG T LY
Sbjct: 448 VDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLEPPEFVQIQANDGKTTLY 507
Query: 359 GTLYLPDEKKYGPPPYKTLVNVYGGPSVQLVSDSWISTVDMRAQFLRSKGILVWKMDNRG 418
G +Y PD K+GPPPYKT++NVYGGPSVQLV DSWI+TVDMR Q+LRS+GILVWK+DNRG
Sbjct: 508 GAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYDSWINTVDMRTQYLRSRGILVWKLDNRG 567
Query: 419 TARRGLQFEGQLKYNIGRVDAEDQLAGAEWLIKKGLAKPGHIGLYGWSYGGFLSAMCLAR 478
TARRGL+FE +K+N G VDAEDQ+ GA+WLI++GLAKP HIG+YGWSYGG+LSA L R
Sbjct: 568 TARRGLKFESWMKHNCGYVDAEDQVTGAKWLIEQGLAKPDHIGVYGWSYGGYLSATLLTR 627
Query: 479 FPDTFSCAVSGAPVTAWDGYDTFYTEKYMGLPSEQRDAYRYGSIMHHVKNL--RGRLLLI 536
+P+ F+CAVSGAPVT+WDGYD+FYTEKYMGLP+E+ + Y S+MHHV NL + +L+L+
Sbjct: 628 YPEIFNCAVSGAPVTSWDGYDSFYTEKYMGLPTEE-ERYLKSSVMHHVGNLTDKQKLMLV 686
Query: 537 HGMIDENVHFRHTARLINSLMAEGKPYDILLFPDERHMPRRLGDRIYMEERIWDFVERNL 596
HGMIDENVHFRHTARL+N+L+ GK Y++L+FPDERHMPR+ DRIYME+RIW+F+E+NL
Sbjct: 687 HGMIDENVHFRHTARLVNALVEAGKRYELLIFPDERHMPRKKKDRIYMEQRIWEFIEKNL 746
>AT2G47390.1 | chr2:19442278-19446253 REVERSE LENGTH=962
Length = 961
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 103/261 (39%), Gaps = 37/261 (14%)
Query: 335 PLKKFQQLSPEIVQIEGKDGTALYGTLYLP---DEKKYGPPPYKTLVNVYGGPSVQLVSD 391
P + L E+++ + KDG L TLYLP D K GP P L Y G +
Sbjct: 644 PYPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLP--CLFWSYPGEFKSKDAA 701
Query: 392 SWISTVDMRAQFLRSKGILVWKMDNRGTARRGLQFEGQLKYNIGRVDAE------DQL-- 443
+ + S L+W ARR G IG D E +QL
Sbjct: 702 GQVRGSPNEFAGIGSTSALLW------LARRFAILSGPTIPIIGEGDEEANDRYVEQLVA 755
Query: 444 ---AGAEWLIKKGLAKPGHIGLYGWSYGGFLSAMCLARFPDTFSCAVSGAPVTAWDGYDT 500
A E ++++G+A I + G SYG F++A LA P F+C ++ + Y+
Sbjct: 756 SAEAAVEEVVRRGVADRSKIAVGGHSYGAFMTANLLAHAPHLFACGIARS-----GAYNR 810
Query: 501 FYTEKYMGLPSEQR------DAYRYGSIMHHVKNLRGRLLLIHGMIDEN--VHFRHTARL 552
T G +E R + Y S ++ +LLIHG D N + R
Sbjct: 811 TLTP--FGFQNEDRTLWEATNVYVEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRF 868
Query: 553 INSLMAEGKPYDILLFPDERH 573
N+L G +++ P E H
Sbjct: 869 FNALKGHGALCRLVVLPHESH 889
>AT4G14570.1 | chr4:8362586-8366525 FORWARD LENGTH=765
Length = 764
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 403 FLRSKGILVWKMDNRGTARRGLQFEGQLKYNIGRVDAEDQLAGAEWLIKKGLAKPGHIGL 462
+L S G ++ RG+ G L +G D +D L + I+ G+A P I +
Sbjct: 555 YLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQDVKDCLLAVDHAIEMGIADPSRITV 614
Query: 463 YGWSYGGFLSAMCLARFPDTFSCAVSGAPVTA------------WDGYDTFYTEKYMGLP 510
G S+GGFL+ + + PD F A + PV W ++ + + +
Sbjct: 615 LGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASMVGITDIPDWCFFEAYGDQSHYTEA 674
Query: 511 SEQRDAYRYG--SIMHHVKNLRGRLLLIHGMIDENVHFRHTARLINSLMAEGKPYDILLF 568
D R+ S + H+ ++ L + G D V + + + +L +G +L+F
Sbjct: 675 PSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDLRVPISNGFQYVRALKEKGVEVKVLVF 734
Query: 569 PDERH 573
P++ H
Sbjct: 735 PNDNH 739
>AT5G36210.1 | chr5:14248202-14253272 REVERSE LENGTH=731
Length = 730
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 25/264 (9%)
Query: 344 PEIVQIEGK-DGTALYGTLYLPDEKKYGP-----PPYKTLVNVYGGPSVQLVSDSWISTV 397
PE+++ + G Y Y P Y PP LV +GGP+ + ++
Sbjct: 458 PELIEFPTEVPGQNAYAYFYPPTNPLYNASMEEKPPL--LVKSHGGPTAESRG-----SL 510
Query: 398 DMRAQFLRSKGILVWKMDNRGTARRGLQFEGQLKYNIGRVDAEDQLAGAEWLIKKGLAKP 457
++ Q+ S+G ++ G+ G ++ +L G VD +D A++L+ G A
Sbjct: 511 NLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADV 570
Query: 458 GHIGLYGWSYGGFLSAMCLARFPDTFSCAVSGAPVTAWD-------GYDTFYTEKYMGLP 510
+ + G S GG+ + LA F D F S V +++ Y + +G
Sbjct: 571 KRLCISGGSAGGYTTLASLA-FRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVG-- 627
Query: 511 SEQRDAYRYGSIMHHVKNLRGRLLLIHGMIDENVHFRHTARLINSLMAEGKPYDILLFPD 570
+++D Y I + V ++L G+ D+ V + ++ +L +G P ++ +
Sbjct: 628 -DEKDFYERSPI-NFVDKFSCPIILFQGLEDKVVTPDQSRKIYEALKKKGLPVALVEYEG 685
Query: 571 ERHMPRRLGDRIYMEERIWDFVER 594
E+H R+ + Y E+ F R
Sbjct: 686 EQHGFRKAENIKYTLEQQMVFFAR 709
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,524,747
Number of extensions: 663535
Number of successful extensions: 1363
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 4
Length of query: 596
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 492
Effective length of database: 8,255,305
Effective search space: 4061610060
Effective search space used: 4061610060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)