BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0279600 Os02g0279600|Os02g0279600
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32370.2  | chr1:11677005-11678088 FORWARD LENGTH=132           68   1e-12

>AT1G32370.2 | chr1:11677005-11678088 FORWARD LENGTH=132
          Length = 131

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 49/82 (59%)

Query: 28  STSNLLQLMEESSPAQXXXXXXXXXXXXXXXXXXNTGQVLHQLPSVISSLDAYMDASLQS 87
           ST+NLL LM +SS +Q                   TGQ L QLP VISSLDA++++ L S
Sbjct: 32  STANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQALAQLPQVISSLDAHIESGLHS 91

Query: 88  ASQIKTVTQLLSNMENNQLRSI 109
              + TVTQLL NME+ QLR++
Sbjct: 92  GVHLNTVTQLLENMESTQLRAL 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.118    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,425,802
Number of extensions: 35676
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 106 (45.4 bits)