BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0277600 Os02g0277600|AK110791
         (499 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32360.1  | chr4:15621550-15624711 FORWARD LENGTH=484          623   e-179
AT5G53460.1  | chr5:21700518-21709629 FORWARD LENGTH=2209          65   1e-10

>AT4G32360.1 | chr4:15621550-15624711 FORWARD LENGTH=484
          Length = 483

 Score =  623 bits (1607), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 313/466 (67%), Positives = 379/466 (81%), Gaps = 8/466 (1%)

Query: 36  PLHVCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQF 95
           PLHVC+VGSGPAGFYTADK+LK HEGA VDIIDRLPTPFGLVRSGVAPDHPETKI +NQF
Sbjct: 21  PLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVRSGVAPDHPETKIAINQF 80

Query: 96  SRVAANDRCQFYGNVTLGRDVSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSARE 155
           SRVA ++RC F GNV LG D+SLSELR  Y VVVLAYGAESD+ LGIPGE L GI+SARE
Sbjct: 81  SRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDKDLGIPGESLSGIYSARE 140

Query: 156 FVWWYNGHPDMCNLAPDLQSTDSAVVLGQGNVALDVARILLRCTSELAATDIADYALDAL 215
           FVWWYNGHPD  +L PDL+++DSAV+LGQGNVALDVARILLR T+ELA+TDIA +AL AL
Sbjct: 141 FVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRPTTELASTDIATHALSAL 200

Query: 216 RGSTIKKVYLVGRRGPVQAACTAKELREILGLKNVHVFIKEADLVTLPADEEEIRNSRIK 275
           + S+I+KVYL+GRRGPVQAA TAKELRE+LG+KN+H+ IK+ DL   PADEEE++ SR +
Sbjct: 201 KESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTDLSVTPADEEEMKTSRAR 260

Query: 276 RRVYELLSKAAIAHKGKNNN-GQKELHFVFFRRPTRFLPS-EDGVTVGAVQLEKTCLKDD 333
           +R+YELLSKAA A K    +  Q+ELHFVFFR+P +FL S E    V  V L+KT L+  
Sbjct: 261 KRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDERKGHVSGVNLQKTILESV 320

Query: 334 GVAGKQVAVGTGEFEDLKCGLVLKSIGYKSLPVEGLPFDKYRGIVPNLKGRVLSSESEN- 392
           G  GKQ+AVGTGEFEDL C +VLK+IGYKS+PV GLPFD  +G+VPN+KGRV+S  S + 
Sbjct: 321 GT-GKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGVVPNVKGRVVSHTSGDI 379

Query: 393 ATVEPGLYVVGWLKRGPTGIVATNLHCAEETVASILEDDKKGLFMGPSDSKKQGRRGLLE 452
           +  EPGLYV GWLKRGP GI+ATNL+CAEETV SI ED ++G++     S K G +GL++
Sbjct: 380 SQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSISEDIEEGVW----KSSKAGSKGLMQ 435

Query: 453 ILEQKNIRFVPFDGWEKIDSKEKMAGELKNKPREKITTWNEILMAS 498
           +LE++ ++ V F GWEKID+KEK  G  +NKPREK+ TW ++L A+
Sbjct: 436 LLEKRKVKKVEFSGWEKIDAKEKQMGIERNKPREKLVTWEDLLAAA 481



>AT5G53460.1 | chr5:21700518-21709629 FORWARD LENGTH=2209
          Length = 2208

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 39   VCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VVNQFSR 97
            V ++GSGPAG   AD++ K   G  V + +R     GL+  GV P+    KI VV +   
Sbjct: 1848 VAIIGSGPAGLAAADQLNK--MGHLVTVYERSDRIGGLMMYGV-PNMKTDKIDVVQRRVD 1904

Query: 98   VAANDRCQFYGNVTLGRD--VSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGIHSARE 155
            +   +   F  N  +G+D   SL  L++  D +VLA G+   R L +PG DL G+H A E
Sbjct: 1905 LMTKEGINFVVNANIGKDPSYSLDGLKEENDAIVLAVGSTKPRDLPVPGRDLSGVHFAME 1964

Query: 156  FV 157
            F+
Sbjct: 1965 FL 1966



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,399,448
Number of extensions: 455711
Number of successful extensions: 1006
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,282,721
Effective search space: 3279957516
Effective search space used: 3279957516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)