BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0276200 Os02g0276200|J075059P05
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16190.1  | chr3:5489883-5491195 REVERSE LENGTH=197            127   2e-30

>AT3G16190.1 | chr3:5489883-5491195 REVERSE LENGTH=197
          Length = 196

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 1   MQKDFVDPATSSAALLAGEAILPXXXXXXXXXRQRGIFIVWVVREHDPSGRDVELFRRHF 60
           MQ DF++   +   +  G++I+P         RQRGI ++WVVREHD  GRDVELFRRH 
Sbjct: 15  MQNDFIEEG-AVTQVKGGKSIVPNVIRVVELARQRGILVIWVVREHDRQGRDVELFRRHN 73

Query: 61  YSSGK-GLGVEGSKGAELADGLTI-KDGDYKLVKTRFSAFFATHLDSVLKTSGIKNLVIV 118
           YSS K G  ++G+ GAEL DGL I ++ DYK+VKTRFSAFF+T+L S L+TSG+  LVI 
Sbjct: 74  YSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTRFSAFFSTNLHSFLQTSGVTKLVIA 133

Query: 119 G 119
           G
Sbjct: 134 G 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,462,452
Number of extensions: 89464
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)