BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0273100 Os02g0273100|AK061985
(389 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57850.1 | chr5:23435548-23437287 REVERSE LENGTH=374 426 e-120
AT3G05190.1 | chr3:1471457-1475067 FORWARD LENGTH=556 80 3e-15
AT5G27410.1 | chr5:9678821-9682468 FORWARD LENGTH=560 79 3e-15
>AT5G57850.1 | chr5:23435548-23437287 REVERSE LENGTH=374
Length = 373
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/325 (64%), Positives = 253/325 (77%), Gaps = 5/325 (1%)
Query: 66 DVPLLSFAEVAERLDEFHASGTRNQNYMAMYSSIFGGITTNPSAMVIPIDDHMVHRGHGV 125
+VP+LS EV ERL A G Q ++AMYSS+ GITT+P+AMV+P+DDHMVHRGHGV
Sbjct: 53 NVPVLSSYEVGERLK--LARG--GQQFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGV 108
Query: 126 FDTAAIMNGHLYELEQHLDRFLKSASMAKITLPFDRSTIRSILIQTVSASKCTQGSLRYW 185
FDTA I+NG+LYEL+QHLDR L+SASMAKI LPFDR TI+ ILIQTVS S C GSLRYW
Sbjct: 109 FDTALIINGYLYELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYW 168
Query: 186 LSVGPGDFQLSSAGCANSALYAIVIESPSLPVPAGCKVITSSIPIKSQQFAVMKSVNYLP 245
LS GPGDF LS + C LYAIVI++ P G KV+TSSIPIK +FA +KSVNYLP
Sbjct: 169 LSAGPGDFLLSPSQCLKPTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATVKSVNYLP 228
Query: 246 NALTKVEGEENGGFTGIWLDDEGFVAEGSNMNVGFVTQ-SKELLMPRFDKILSGCTAKRV 304
N L+++E E G + GIW+ +GF+AEG NMNV FV KEL+MPRFD +LSGCTAKR
Sbjct: 229 NVLSQMEAEAKGAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLSGCTAKRT 288
Query: 305 LTLAKQLVADGRLSGISSRNVSVQEGKAADEMMLIGSGILVKPVVQWDDQIIGSGKEGPI 364
LTLA+QLV+ G L + +V+V++GK ADEMMLIGSGI ++PV+QWD++ IG GKEGPI
Sbjct: 289 LTLAEQLVSKGILKTVKVMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPI 348
Query: 365 AQMLFNLILEDMRSGPPSVRIPVSY 389
A+ L +L+LEDMRSGPPSVR+ V Y
Sbjct: 349 AKALLDLLLEDMRSGPPSVRVLVPY 373
>AT3G05190.1 | chr3:1471457-1475067 FORWARD LENGTH=556
Length = 555
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 112 IPIDDHMVHRGHGVFDTAAIMNGHLYELEQHLDRFLKSASMAKITLPFDRSTIRSILIQT 171
+ + D +V G V++ I G +++LE+HLDR SA L FD R + +
Sbjct: 278 VSVFDSVVQGGDSVWEGLRIYKGKIFKLEEHLDRLFDSAK----ALAFDNVPAREEVKEA 333
Query: 172 VSASKCTQG-----SLRYWLSVGPGDFQLSSAGCANSALYAIVIESPSLPV---PAGCKV 223
+ + T G +R L+ G S IV+ PV G +
Sbjct: 334 IFRTLITNGMFDNTHIRLSLTRGKKVTSGMSPAYNRYGCTLIVLAEWKPPVYDNEGGIVL 393
Query: 224 ITSSIPIKSQQF--AVMKSVNYLPNALTKVEGEENGGFTGIWLDDEGFVAEGSNMNVGFV 281
+T++ S + + N L N L K+E I LD +G+V+E + N+ F+
Sbjct: 394 VTATTRRNSPNNLDSKIHHNNLLNNILAKIESNNTNAADAIMLDKDGYVSETNATNI-FM 452
Query: 282 TQSKELLMPRFDKILSGCTAKRVLTLAKQLVADGRLSGISSRNVSVQEGKAADEMMLIGS 341
+ +L P D L G T V+ L +V + + + R +S+ E A+E+ G+
Sbjct: 453 VKKGCVLTPHADYCLPGITRATVMEL---VVKENFI--LEERRISLSEFHTANEVWTTGT 507
Query: 342 GILVKPVVQWDDQIIGSGKEGPIAQMLFN 370
+ PVV+ D ++IG GK GP+ + L N
Sbjct: 508 MGELSPVVKIDGRVIGDGKVGPVTRTLQN 536
>AT5G27410.1 | chr5:9678821-9682468 FORWARD LENGTH=560
Length = 559
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 12/261 (4%)
Query: 116 DHMVHRGHGVFDTAAIMNGHLYELEQHLDRFLKSASMAKITLPFDRSTIRSILIQT-VSA 174
D +V G V++ I G +++LE+HLDR SA R I+ + +T ++
Sbjct: 279 DSVVQGGDSVWEGLRIYKGKVFKLEEHLDRLSDSAKALAFNNVPTREEIKEAIFRTLITN 338
Query: 175 SKCTQGSLRYWLSVGPGDFQLSSAGCANSALYAIVIESPSLPV---PAGCKVITSSIPIK 231
+R L+ G S IV+ PV G ++T++
Sbjct: 339 GMFDNTHIRLSLTRGKKVTSGMSPAFNRYGCTLIVLAEWKPPVYDNDGGIVLVTATTRRN 398
Query: 232 SQQF--AVMKSVNYLPNALTKVEGEENGGFTGIWLDDEGFVAEGSNMNVGFVTQSKELLM 289
S + + N L N L K+E I LD +GFV+E + N+ F+ + +L
Sbjct: 399 SPNNLDSKIHHNNLLNNILAKIESNNANVDDAIMLDKDGFVSETNATNI-FMVKKDRVLT 457
Query: 290 PRFDKILSGCTAKRVLTLAKQLVADGRLSGISSRNVSVQEGKAADEMMLIGSGILVKPVV 349
P D L G T V+ L +V + + + R +S+ E ADE+ G+ + PVV
Sbjct: 458 PHADYCLPGITRATVMEL---VVKENFI--LEERRISLSEFHTADEVWTTGTMGELSPVV 512
Query: 350 QWDDQIIGSGKEGPIAQMLFN 370
+ D ++IG GK GP+ + L N
Sbjct: 513 KIDGRVIGEGKVGPVTRRLQN 533
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,886,050
Number of extensions: 316579
Number of successful extensions: 832
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)