BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0272400 Os02g0272400|Os02g0272400
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32750.1  | chr4:15796415-15798091 REVERSE LENGTH=294          257   4e-69

>AT4G32750.1 | chr4:15796415-15798091 REVERSE LENGTH=294
          Length = 293

 Score =  257 bits (657), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 142/301 (47%), Positives = 181/301 (60%), Gaps = 21/301 (6%)

Query: 1   MALLGDALRQAFMPRRAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLGIVFP 60
           MA++GDALRQAFMP++ Y                                  VSL IVFP
Sbjct: 1   MAIIGDALRQAFMPKQEYESLREEDRAWIKLQRPTLVSIVAFLCFVIFTCTIVSLKIVFP 60

Query: 61  AEPAERPFCRERRMXXXXXXXXXXXXXXXXXXXXRGGAFYMTTAEAADFYWMVVFVPSAL 120
           +   +RPFC + ++                      GAFY+T  E  D+YWMVVFVPS +
Sbjct: 61  SNVLKRPFCSDIKLQPLPIYGKARDSDLFP------GAFYLTDQETVDYYWMVVFVPSTI 114

Query: 121 LFAVSSAYLVSGISVAYAAPRRHPLICVVENNFCASKR-----------VFAVIFGLMAI 169
           +F VSS YLV+GI VAY+AP RH  + VVENN+CAS+R           VFA+I+GL+AI
Sbjct: 115 IFLVSSVYLVAGIFVAYSAPHRHGFLKVVENNYCASRRGGVRCLSILNVVFAIIYGLLAI 174

Query: 170 ILGSTLLALGSSCSVPLFWCYEITAWGLVILYAGTAFFLRRKAAVILDEGDYTPHN-VGL 228
            LGS+LL LGSSCSVPLFWCYEI++WGLVILYAGTAF LRR+AA+ +DEG++   N  GL
Sbjct: 175 FLGSSLLTLGSSCSVPLFWCYEISSWGLVILYAGTAFSLRRRAALTIDEGEFGNRNDQGL 234

Query: 229 EMLETT-IEVTPEMQRRINDGFKSWMGPSTLXXXXXXXXXXXYIEHNVPIPTASVQVRQE 287
           EMLE   +E TP+++RR+N+GFK+WMGPS L           Y E  VP  T ++  RQ 
Sbjct: 235 EMLEANPLEFTPDVERRVNEGFKAWMGPSLLSSDEEEDEPDFYNE--VPNVTHTLSSRQR 292

Query: 288 N 288
           +
Sbjct: 293 S 293



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,733,883
Number of extensions: 157730
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)