BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0269000 Os02g0269000|AK071119
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269 354 3e-98
AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257 353 7e-98
AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275 335 2e-92
AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262 313 8e-86
>AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269
Length = 268
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 167/215 (77%), Positives = 184/215 (85%)
Query: 74 EAFHKVVHSWASKKFMTGCVILFPIAVTFYITWWFFRFVDGFFSPIYAHLGINIFGLGFV 133
E + WASKKFMTGCVIL PIA+TFYITWWF FVDGFFSPIYA LGIN+FG GF+
Sbjct: 53 ETLSLFIRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFL 112
Query: 134 TSISFIFVVGVFMSSWLGASILGLGEWFIKRMPFVRHIYNASKQISAAISPDQNKHAFKE 193
TSI+FIF+VGVFMSSWLGAS+L LGEWFIKRMPFVRHIYNASKQIS AISPDQN AFKE
Sbjct: 113 TSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKE 172
Query: 194 VVIIRHPRIGEYAFGFITSEVLLQDYSSEEQMYCVYVPTNHLYIGDIFLVNSSDVIRPNL 253
V IIRHPR+GEYAFGFITS V+LQ+Y +EE++ CVYVPTNHLYIGD+ LVNS+DVIRPNL
Sbjct: 173 VAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNL 232
Query: 254 SVREGIEIVVSGGMSMPQVLSIVETEQNQWSRMRS 288
SVREGIEIVVSGGMSMPQ+LS V+ R S
Sbjct: 233 SVREGIEIVVSGGMSMPQILSTVDKPLASIDRATS 267
>AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257
Length = 256
Score = 353 bits (905), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 167/206 (81%), Positives = 182/206 (88%)
Query: 72 GREAFHKVVHSWASKKFMTGCVILFPIAVTFYITWWFFRFVDGFFSPIYAHLGINIFGLG 131
G E + WASKKFMTGCVIL PIAVTFY TWWF FVDGFFSPIYA LGINIFG G
Sbjct: 41 GHETLSLFIRGWASKKFMTGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFG 100
Query: 132 FVTSISFIFVVGVFMSSWLGASILGLGEWFIKRMPFVRHIYNASKQISAAISPDQNKHAF 191
F+TSI+FIF+VGVFMSSWLGAS+L LGEWFIKRMPFVRHIYNASKQIS AISPDQN AF
Sbjct: 101 FLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAF 160
Query: 192 KEVVIIRHPRIGEYAFGFITSEVLLQDYSSEEQMYCVYVPTNHLYIGDIFLVNSSDVIRP 251
KEV IIRHPR+GEYAFGFITS V+LQ+Y +EE++ CVYVPTNHLYIGDI LVNS+DVIRP
Sbjct: 161 KEVAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRP 220
Query: 252 NLSVREGIEIVVSGGMSMPQVLSIVE 277
NLSVREGIEIVVSGGMSMPQ+LS ++
Sbjct: 221 NLSVREGIEIVVSGGMSMPQILSTLD 246
>AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275
Length = 274
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 155/209 (74%), Positives = 184/209 (88%)
Query: 72 GREAFHKVVHSWASKKFMTGCVILFPIAVTFYITWWFFRFVDGFFSPIYAHLGINIFGLG 131
G+EA +KV+ SWASKKFMTGCVIL PIAVTFY TWWF FVDGFFSPIY HLGIN+FGLG
Sbjct: 41 GKEAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFGLG 100
Query: 132 FVTSISFIFVVGVFMSSWLGASILGLGEWFIKRMPFVRHIYNASKQISAAISPDQNKHAF 191
FVTSI+FIF+VGVFMSSWLGAS+L +GEWFIK+MP V +IY+ASKQIS AISPDQ+ AF
Sbjct: 101 FVTSITFIFMVGVFMSSWLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPDQSSGAF 160
Query: 192 KEVVIIRHPRIGEYAFGFITSEVLLQDYSSEEQMYCVYVPTNHLYIGDIFLVNSSDVIRP 251
KEV IIRHP +GEYAFGFITS V+L+ + E++ CVYVPTNHLY+GDIFL++S D+IRP
Sbjct: 161 KEVAIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRP 220
Query: 252 NLSVREGIEIVVSGGMSMPQVLSIVETEQ 280
NLSVREGIEIV+SGGMS+P +L+ +++E
Sbjct: 221 NLSVREGIEIVISGGMSIPHMLTTLDSET 249
>AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262
Length = 261
Score = 313 bits (801), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 149/218 (68%), Positives = 179/218 (82%)
Query: 73 REAFHKVVHSWASKKFMTGCVILFPIAVTFYITWWFFRFVDGFFSPIYAHLGINIFGLGF 132
R+A + V+ SW SKKFMTG V+LFP+AVTF ITWWF +FVDGFFSPIY +LG++IFGLGF
Sbjct: 38 RKACYGVLQSWVSKKFMTGFVVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGF 97
Query: 133 VTSISFIFVVGVFMSSWLGASILGLGEWFIKRMPFVRHIYNASKQISAAISPDQNKHAFK 192
+TS+ F F VG+F SSWLG+++ LGE FI+RMPFV+HIY+ASKQIS AISPDQN AFK
Sbjct: 98 ITSVLFTFFVGIFASSWLGSTVFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFK 157
Query: 193 EVVIIRHPRIGEYAFGFITSEVLLQDYSSEEQMYCVYVPTNHLYIGDIFLVNSSDVIRPN 252
EV IIRHPRIGEYAFGFITS V LQ EE++ VYVPTNHLYIGD+FLV+S ++IRPN
Sbjct: 158 EVAIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPN 217
Query: 253 LSVREGIEIVVSGGMSMPQVLSIVETEQNQWSRMRSSR 290
LS+REGIEI+VS GM+MPQV+S V+ N+ S R
Sbjct: 218 LSIREGIEIIVSVGMTMPQVISHVDRTTNRTPHQHSLR 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,152,092
Number of extensions: 191322
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 4
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)