BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0265700 Os02g0265700|AK100882
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64050.1  | chr1:23762584-23765714 FORWARD LENGTH=669           67   2e-11

>AT1G64050.1 | chr1:23762584-23765714 FORWARD LENGTH=669
          Length = 668

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 68/276 (24%)

Query: 27  SCDGKDQCTDKPM-KGPSQMEVCDSTIHCPKDILNRLTLPQGQDLDSLLSPGCESSAAVK 85
           S   KD C +  +   P    +CD+      D+L RL LP  +DLDSLL    + S   K
Sbjct: 318 SSSSKDHCINSEIPSTPLSFPLCDAG-----DVLKRLGLPPSKDLDSLLQDASKPSHNSK 372

Query: 86  PSLP---SVTTHGASLPPFPWSHSQAGGYRPGADCGKHGSSRSNTQWQWVRVGS------ 136
            +L    S     + LP FPWS    G  R  ++  K  + ++  Q +W+R+        
Sbjct: 373 NNLDQQRSAKPPHSGLPHFPWSQPFNGSSRTNSEAAKLVTCKTLCQGRWLRIADTSMSSP 432

Query: 137 -----NLTALDSEDPSVHKIDDLLQEMDTAKTSIMDSYGKQSSLCCTESTSGSLGQIIQS 191
                N   L+S   + + +  LL++  T   +    +    S  C E++  +L      
Sbjct: 433 EGITDNFANLESLTFNQNLVPPLLKQTITGVKTSQTKFANTISCQCAEASVSTL------ 486

Query: 192 RKKLNGHNPQQLFSMDNVDSSDSFQKNDNESFLLRTPQASPKV----------LQAAEIL 241
                                       N  F+ + P+ SP V          L+AA  L
Sbjct: 487 ---------------------------QNSFFVPKEPEGSPDVEDDALSCPQLLEAARTL 519

Query: 242 CDMR-SSMDVWSPQVFSNGTIKWPKSPSEKVMKARK 276
           CD+   S +  +P    NG ++WPK  S+K MKARK
Sbjct: 520 CDIAVQSANHDNP----NGILRWPKKLSQKSMKARK 551



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,378,427
Number of extensions: 414042
Number of successful extensions: 1141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)