BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0258900 Os02g0258900|AK100565
         (394 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31955.1  | chr2:13584635-13586484 REVERSE LENGTH=391          587   e-168

>AT2G31955.1 | chr2:13584635-13586484 REVERSE LENGTH=391
          Length = 390

 Score =  587 bits (1514), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 316/351 (90%), Gaps = 1/351 (0%)

Query: 44  SQRLYATSSCANVPEVALSEAPLSDMLVDSFGRFHNYLRISLTERCNLRCQYCMPAQGVQ 103
           S+RL+++S  A+  +  + + P+SDML+D FGR H YLRISLTERCNLRCQYCMP++GV+
Sbjct: 41  SERLFSSSYAAHQVD-QIKDNPVSDMLIDKFGRLHTYLRISLTERCNLRCQYCMPSEGVE 99

Query: 104 LTPNSELLSHDEIIRVAGLFVTSGVDKIRLTGGEPTIRKDIEDICLHLSGLKGLKTLAMT 163
           LTP  +LLS  EI+R+AGLFV++GV+KIRLTGGEPT+RKDIE+ICL LS LKGLK LA+T
Sbjct: 100 LTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAIT 159

Query: 164 TNGLVLSKKLPRLKECGLNALNISLDTLVPAKFEFMTRRKGHSRVMESIDASIQLGFQSV 223
           TNG+ L+KKLPRLKECGL++LNISLDTLVPAKFEF+TRRKGH RVM+SID +I+LG+  V
Sbjct: 160 TNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAIELGYNPV 219

Query: 224 KVNCVVMRGMNDDEICDFVEMTRDKPVNVRFIEFMPFDGNVWNVKKLVPYAEMMDKVRQR 283
           KVNCV+MRG+NDDEICDFVE+TRDKP+NVRFIEFMPFDGNVWNVKKLVPYAE+MDKV +R
Sbjct: 220 KVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEVMDKVVKR 279

Query: 284 FKGVERLQDHPSETAKNFKIDGHAGTISFITSMTEHFCAGCNRLRLLADGNLKVCLFGPS 343
           F  ++R+QDHP+ETAKNF IDGH G++SFITSMTEHFCAGCNRLRLLADGN KVCLFGPS
Sbjct: 280 FPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPS 339

Query: 344 EVSLREPIRAGVDDAGLREIISAAVKRKKAKHAGMFDIAKTANRPMIHIGG 394
           EVSLR+P+R+G DD  LREII AAVKRKKA HAGM DIAKTANRPMIHIGG
Sbjct: 340 EVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,104,512
Number of extensions: 326896
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)