BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0254800 Os02g0254800|Os02g0254800
         (560 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64260.1  | chr1:23847756-23849915 FORWARD LENGTH=720           62   6e-10
AT1G49920.1  | chr1:18481798-18484233 REVERSE LENGTH=786           62   6e-10
AT1G64255.1  | chr1:23844954-23847206 FORWARD LENGTH=751           51   2e-06

>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
          Length = 719

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 51/218 (23%)

Query: 1   MDKIKEKCPDAIQWLDENHPYVWS---------------RSNFFELCK------------ 33
           M+ IKEK P+A +WLD+   + W+               R   F +C+            
Sbjct: 507 MNDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGIIEIDREALFAVCRGFPYCTVAMTGG 566

Query: 34  VDYINNNLSESFNSWVSKTKDLHIVDMHEKIRHMIVAKFDLRANIARNMEGKIIPAITKD 93
           V  + + L  SF        D  +  ++  +   +V        +   M   I P +   
Sbjct: 567 VMLMFDELRSSF--------DKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSI-PYVITQ 617

Query: 94  LNAQSKAIKDHEVLRCGDGTAEVTVSTITHAVNLNERTCSCRAWQISGKPCSHALAFIAK 153
           L   S  + +             +       V LN  TC+CR +Q    PC HALA   K
Sbjct: 618 LERDSFKVSE-------------SSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEK 664

Query: 154 LSRQVHMGDFVDECFSVERFRKAYAGLFNPMTSKHLWP 191
           L  +++   +VDEC++VE++ K YA  F+P+     WP
Sbjct: 665 L--KINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWP 700



>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
          Length = 785

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 44/220 (20%)

Query: 1   MDKIKEKCPDAIQWLDENHPYVWSRSN---------------FFELCK------------ 33
           M +IKE+ P+A +WLD+  P+ W+ ++                F +CK            
Sbjct: 512 MKEIKERNPEAWKWLDQFPPHQWALAHDDGRRYGIMRIDTEALFAVCKRFRKVAMAGGVM 571

Query: 34  --VDYINNNLSESFNSWVSKTKDLHIVDMHEKIRHMIVAKFDLRANIARNMEGKIIPAIT 91
                + +  +ESF       K   +   H      ++ K +     +      I P + 
Sbjct: 572 LLFGQLKDAFAESFKLSRGSLKHGDVYTEH------VMEKLEEFETDSDTWVITITP-LE 624

Query: 92  KDLNAQSKAIKDHEVLRCGDGTAEVTVSTITHAVNLNERTCSCRAWQISGKPCSHALAFI 151
           +D    S A K    L    G +  + S I   V LN+ TC+C  +Q +  PC HALA  
Sbjct: 625 RDAYQVSMAPKKKTRLM---GQSNDSTSGI---VQLNDTTCTCGEFQKNKFPCLHALAVC 678

Query: 152 AKLSRQVHMGDFVDECFSVERFRKAYAGLFNPMTSKHLWP 191
            +L  +++   +VD+C++VER+ K Y+  F+P+     WP
Sbjct: 679 DEL--KINPLQYVDDCYTVERYHKTYSAKFSPVPELSAWP 716



>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
          Length = 750

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 25/206 (12%)

Query: 1   MDKIKEKCPDAIQWLDENHPYVWS-------RSNFFEL-CKVDYINNNLSESFNSWVSKT 52
           M+ IKEK P+A +WLD+     W+       R    E+  K  +   N  E     V+ +
Sbjct: 514 MNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEINTKALFAVCNAFEQAGHVVTGS 573

Query: 53  KDLHIVDMHEKIRHMIVAKFDLRANIARNME--GKII--PAITKDLNAQSKAIKDHEVLR 108
               ++ + +++R    +KFD   + +R+    G +   P + K    ++  +    ++ 
Sbjct: 574 ----VLLLFDELR----SKFDKSFSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVT 625

Query: 109 CGDGTAEVTVSTITHA---VNLNERTCSCRAWQISGKPCSHALAFIAKLSRQVHMGDFVD 165
             D  A    + +      V L++ +C+C  +Q    PC HALA   KL  + +   +VD
Sbjct: 626 PLDNNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHALAVCKKL--KFNPLQYVD 683

Query: 166 ECFSVERFRKAYAGLFNPMTSKHLWP 191
           +C+++ER ++ YA +F+ +     WP
Sbjct: 684 DCYTLERLKRTYATIFSHVPEMSAWP 709



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,976,080
Number of extensions: 333696
Number of successful extensions: 916
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 3
Length of query: 560
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,255,305
Effective search space: 3764419080
Effective search space used: 3764419080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)