BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0230200 Os02g0230200|AK105482
         (352 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58800.1  | chr3:21748562-21749596 FORWARD LENGTH=345          273   1e-73

>AT3G58800.1 | chr3:21748562-21749596 FORWARD LENGTH=345
          Length = 344

 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/290 (50%), Positives = 189/290 (65%), Gaps = 12/290 (4%)

Query: 59  VERRSGNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREA 118
           +E ++  +++W +P     P+A +F+A GC  +A+DF+D S  CP+C GLPEER   R A
Sbjct: 66  LEIQNETQLIWTIP---NSPKAVLFIAHGCHRKASDFWDKSSDCPQCTGLPEERILMRFA 122

Query: 119 LRRGYAVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGG 178
           L R +AVL VSS   CW+     G E   V SII+ WV E+H  +L  LPLV +GASSGG
Sbjct: 123 LARKFAVLTVSSTGTCWTF----GKEKTIVGSIIKSWV-EKH--KLERLPLVALGASSGG 175

Query: 179 YFLSALAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLR 238
           YF+SALA  ++FSS+ +MIAEGVF  +  I  +YPP LFV MPKD  R +++   +  LR
Sbjct: 176 YFVSALATEMQFSSIVLMIAEGVFDQIS-ISKQYPPTLFVHMPKDVYRQQKIREFLEGLR 234

Query: 239 GSRVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTP 298
              +   EI+C +  +S  FLA RIPGL   V+  L  + R KGFVDEKG++K DGR TP
Sbjct: 235 MEGIDAAEIECLDLPISPDFLADRIPGLDSDVSAKLFKLFRDKGFVDEKGYMKRDGRRTP 294

Query: 299 WKKAAEEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHM 348
           WK+A    KI  E+  L   V EELNLAYAYHE TSL++ +IF WFESHM
Sbjct: 295 WKQALSGYKISLEQ-SLITPVEEELNLAYAYHEMTSLQSDQIFSWFESHM 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,106,257
Number of extensions: 282852
Number of successful extensions: 718
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,364,969
Effective search space: 2107972188
Effective search space used: 2107972188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)