BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0224900 Os02g0224900|AK101829
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12710.1 | chr1:4326980-4328324 REVERSE LENGTH=292 144 3e-35
AT3G61060.2 | chr3:22603166-22604336 FORWARD LENGTH=292 138 2e-33
AT1G63090.1 | chr1:23391283-23392609 REVERSE LENGTH=290 132 2e-31
AT5G52120.1 | chr5:21176661-21180143 REVERSE LENGTH=292 123 7e-29
AT3G53000.1 | chr3:19654278-19655801 FORWARD LENGTH=301 113 1e-25
>AT1G12710.1 | chr1:4326980-4328324 REVERSE LENGTH=292
Length = 291
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Query: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
RF SVAYLQQIW FEV GEIDF F V TYS++FR+ LGR K FGRR C+TE VHGWD K
Sbjct: 151 RFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIK 210
Query: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVVSKPDQ-TIKLKFSMA 237
PVRFQL T DGQ+S SQC L E G+W+ YHAG+ VV + ++ + K+KFSM
Sbjct: 211 PVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKFSMT 261
>AT3G61060.2 | chr3:22603166-22604336 FORWARD LENGTH=292
Length = 291
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
Query: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
RF S AY+QQIW FEV GE + F TYSL+FRI LG+ KR GRR C++EH+HGWD K
Sbjct: 150 RFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIK 209
Query: 188 PVRFQLSTSDGQHSLSQCSL-GEPGSWVLYHAGNFVVSKPDQTIKLKFSMA 237
PVRFQL+TSD Q ++S C L PGSW YH G+F V+ PD + +KFSM
Sbjct: 210 PVRFQLATSDNQQAVSLCYLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMT 260
>AT1G63090.1 | chr1:23391283-23392609 REVERSE LENGTH=290
Length = 289
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 73/96 (76%)
Query: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
RF SVAY+QQIW F+V GEIDF F TYS+YFR+ LG+ KRFG + TE VHGW+ K
Sbjct: 149 RFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNIK 208
Query: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVV 223
PVRFQLST DGQHS SQC L E G+W YHAG+FVV
Sbjct: 209 PVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVV 244
>AT5G52120.1 | chr5:21176661-21180143 REVERSE LENGTH=292
Length = 291
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%)
Query: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
RF S+ YL+QIW E VG+I F F YSL F+I LG+ ++ GR+ CS + VHGWD K
Sbjct: 151 RFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIK 210
Query: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVVSKPDQTIKLKFSM 236
PVRFQLSTSDGQ ++S+ L E G WV +HAG+FVV + + +KFSM
Sbjct: 211 PVRFQLSTSDGQCAMSERHLDESGRWVYHHAGDFVVENQNSPVWVKFSM 259
>AT3G53000.1 | chr3:19654278-19655801 FORWARD LENGTH=301
Length = 300
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 72/120 (60%), Gaps = 11/120 (9%)
Query: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
RFH VAYLQQIW FEV G + F YSL FRIHLGRF KR GRR C E HGWD K
Sbjct: 144 RFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDLK 203
Query: 188 PVRFQLSTSDGQHSLSQCSLGEP-----------GSWVLYHAGNFVVSKPDQTIKLKFSM 236
PVRF LSTSDGQ + + L + G W+ Y G F+V+ + + ++++SM
Sbjct: 204 PVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWSM 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,936,551
Number of extensions: 137678
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 5
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)