BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0223700 Os02g0223700|J013106E03
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128 58 5e-09
AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117 57 8e-09
AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106 56 1e-08
AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111 53 1e-07
AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125 52 4e-07
AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111 49 2e-06
>AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128
Length = 127
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 188 DAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDGKW 232
+AE+QR+KR+ +Y Y VEG+VK S+++S KW K CS AV G W
Sbjct: 83 EAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGLW 127
>AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117
Length = 116
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 188 DAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVD 229
D +LQR+KR+V+Y+AY VEGK+K S R+S KWIK KC++ ++
Sbjct: 75 DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116
>AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 149 NLRGYTPSFAALDDTAVAPPIPAKKQVSPTGSFAGAVVDDAELQRRKRLVAYKAYDVEGK 208
+ R Y+ S+ ++ + +K ++ + S+ + D ELQR+KR+ +YK Y VEGK
Sbjct: 27 DFRSYSASYGTRENNIY--DVKKEKSIARSKSWG---ITDPELQRKKRVASYKMYGVEGK 81
Query: 209 VKDSVRRSVKWIKGKCSRAVDGKW 232
VK S R S +W+K + ++ V G W
Sbjct: 82 VKGSFRNSFRWLKQRYTQVVYGWW 105
>AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111
Length = 110
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 186 VDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAV 228
+ DAE++R+KR+ YKAY VEGKVK +++ +WIK KC + V
Sbjct: 65 LSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIV 107
>AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125
Length = 124
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 168 PIPAKKQVSPTGSFAGAVVDDAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRA 227
P+ ++ S + F G +D E++R++R+ YK Y EGK+K ++R+S KWIK +CS+
Sbjct: 62 PVRPRRSSSHSTLFKGWW-NDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKI 120
Query: 228 VDG 230
+ G
Sbjct: 121 IHG 123
>AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111
Length = 110
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 188 DAELQRRKRLVAYKAYDVEGKVKDSVRRSVKWIKGKCSRAVDG 230
DAE +R+KR+ YK Y +EGKVK +V++ WIK + S + G
Sbjct: 68 DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.125 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,320,457
Number of extensions: 96912
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)