BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0210800 Os02g0210800|AK073717
(201 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24750.1 | chr5:8490821-8494536 REVERSE LENGTH=521 218 1e-57
AT1G43620.1 | chr1:16425654-16429500 REVERSE LENGTH=616 89 2e-18
AT3G07020.2 | chr3:2218120-2221590 REVERSE LENGTH=638 82 2e-16
>AT5G24750.1 | chr5:8490821-8494536 REVERSE LENGTH=521
Length = 520
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 148/198 (74%), Gaps = 5/198 (2%)
Query: 1 VPSMGFLRNPKAFLMVLKAVIEKTDYRFILFSSGYQPLDSAIQYFAPSVAESSEYQASAL 60
V SMGF+R+P AFL VL++VI+ T YRFI+F++ Y PLD+AI+ A + ++SSE Q L
Sbjct: 316 VGSMGFVRDPIAFLRVLQSVIQITGYRFIIFTASYGPLDAAIRTIA-NGSDSSEKQP--L 372
Query: 61 HCDSNLLFNGRLFCFSGSIPYSWLFPKCAVAIHHAGSGSTAAALFAGIPQISCPFLLDQF 120
H ++ FNG+LFCFSG +PY+W+F CA AIHH GSGS AAAL AGIPQI CPF+LDQF
Sbjct: 373 HAGISI-FNGKLFCFSGMVPYNWMFRTCAAAIHHGGSGSVAAALQAGIPQIICPFMLDQF 431
Query: 121 YWAERLHWLGVAPEPLGRQH-LIPDTDNASSINSAADMLIGAIKSALSPEIKAQATRIAN 179
YWAE++ WLGVAP+PL R H L+ D+++ +I AA ++ AI ALS + +A+A IA
Sbjct: 432 YWAEKMSWLGVAPQPLKRNHLLLEDSNDEKNITEAAQVVAKAIYDALSAKTRARAMEIAE 491
Query: 180 KLSSEDGIGEALRILKES 197
LS EDG+ EA+R+L+E
Sbjct: 492 ILSLEDGVTEAVRVLREE 509
>AT1G43620.1 | chr1:16425654-16429500 REVERSE LENGTH=616
Length = 615
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 80 PYSWLFPKCAVAIHHAGSGSTAAALFAGIPQISCPFLLDQFYWAERLHWLGVAPEPLGRQ 139
P+ WLFP+C+ +HH G+G+TA L AG P PF DQF+W +R++ G+ P P+
Sbjct: 468 PHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIA 527
Query: 140 HLIPDTDNASSINSAADMLIGAIKSALSPEIKAQATRIANKLSSEDGIGEALRILKESFA 199
L +N SS +I+ L PE+K+Q +A L +EDG+ A+
Sbjct: 528 QL--SVENLSS----------SIRFMLQPEVKSQVMELAKVLENEDGVAAAVDAFHRHLP 575
Query: 200 PN 201
P
Sbjct: 576 PE 577
>AT3G07020.2 | chr3:2218120-2221590 REVERSE LENGTH=638
Length = 637
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 78 SIPYSWLFPKCAVAIHHAGSGSTAAALFAGIPQISCPFLLDQFYWAERLHWLGVAPEPLG 137
++P+ WLFP+C +HH G+G+TAA L A P PF DQ +W ER+H GV P P+
Sbjct: 502 NVPHDWLFPRCKAVVHHGGAGTTAAGLKASCPTTIVPFFGDQPFWGERVHARGVGPSPIP 561
Query: 138 RQHLIPDTDNASSINSAADMLIGAIKSALSPEIKAQATRIANKLSSEDGIGEALR 192
S++ D AI L ++K+ A +A + EDG+ A++
Sbjct: 562 VDEF--------SLHKLED----AINFMLDDKVKSSAETLAKAMKDEDGVAGAVK 604
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,277,338
Number of extensions: 171882
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)