BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0197900 Os02g0197900|AK102759
(161 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17150.1 | chr4:9638591-9641648 FORWARD LENGTH=503 194 2e-50
AT4G14290.1 | chr4:8225547-8230057 REVERSE LENGTH=559 166 4e-42
AT3G23540.1 | chr3:8443665-8448070 FORWARD LENGTH=567 163 4e-41
>AT4G17150.1 | chr4:9638591-9641648 FORWARD LENGTH=503
Length = 502
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 111/157 (70%), Gaps = 5/157 (3%)
Query: 8 MIEQFVNFVIRPPRSEYNPDQYLWETEFILAGRKYKRLDLELTNARGLTIKCSHYVPAFI 67
MI+QF+NFVIRPPR+EY+PDQYLWE EF L G K KR DLELTN+RG T++CSHYVP+
Sbjct: 10 MIDQFINFVIRPPRAEYDPDQYLWEKEFSLGGTKCKRQDLELTNSRGHTLRCSHYVPSSS 69
Query: 68 PENTSLPCVIYCHGNSGCRADANEAAVILLPANITVFTLDFXXXXXXXXDYVSLGWHEAF 127
E+T LPCVIYCHGNSGCRADANEA ++LLP+NITVFTLDF DYVSLGWHE
Sbjct: 70 REDTPLPCVIYCHGNSGCRADANEAVMVLLPSNITVFTLDFSGSGLSEGDYVSLGWHEK- 128
Query: 128 GGDRWVLLQAYSMEQKIPRLLEW---YWIVLSLTYMA 161
D ++ ++ R+ W V SL Y A
Sbjct: 129 -DDLKTVVSYLRNSNQVSRIGLWGRSMGAVTSLLYGA 164
>AT4G14290.1 | chr4:8225547-8230057 REVERSE LENGTH=559
Length = 558
Score = 166 bits (421), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 92/117 (78%)
Query: 9 IEQFVNFVIRPPRSEYNPDQYLWETEFILAGRKYKRLDLELTNARGLTIKCSHYVPAFIP 68
+EQ VNFVIRPPR+EYNP+ L E EF+L GR Y+R DLE+ N RG ++CSHY+P P
Sbjct: 1 MEQLVNFVIRPPRAEYNPEHDLLEQEFLLKGRWYQRKDLEVKNIRGDILQCSHYMPVERP 60
Query: 69 ENTSLPCVIYCHGNSGCRADANEAAVILLPANITVFTLDFXXXXXXXXDYVSLGWHE 125
E+ LPCVIYCHGNSGCRADA+EAA++LLP+NIT+FTLDF ++V+LGW+E
Sbjct: 61 EDRPLPCVIYCHGNSGCRADASEAAIVLLPSNITIFTLDFSGSGLSGGEHVTLGWNE 117
>AT3G23540.1 | chr3:8443665-8448070 FORWARD LENGTH=567
Length = 566
Score = 163 bits (413), Expect = 4e-41, Method: Composition-based stats.
Identities = 68/117 (58%), Positives = 91/117 (77%)
Query: 9 IEQFVNFVIRPPRSEYNPDQYLWETEFILAGRKYKRLDLELTNARGLTIKCSHYVPAFIP 68
++Q VNF+IRPPR+EY+P+ L E +F++ GR Y+R DLE+ N+RG ++CSHY+P P
Sbjct: 1 MDQLVNFIIRPPRAEYDPEHDLLEKKFMMKGRWYQRKDLEVKNSRGDVLQCSHYMPVERP 60
Query: 69 ENTSLPCVIYCHGNSGCRADANEAAVILLPANITVFTLDFXXXXXXXXDYVSLGWHE 125
E LPCVIYCHGNSGCRAD +EAA++LLP+NITVFTLDF ++V+LGW+E
Sbjct: 61 EGKPLPCVIYCHGNSGCRADGSEAAIVLLPSNITVFTLDFSGSGLSGGEHVTLGWNE 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,413,759
Number of extensions: 122769
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 3
Length of query: 161
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 70
Effective length of database: 8,611,713
Effective search space: 602819910
Effective search space used: 602819910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)