BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0197800 Os02g0197800|AK061372
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27340.1  | chr3:10121303-10122692 FORWARD LENGTH=142          171   1e-43

>AT3G27340.1 | chr3:10121303-10122692 FORWARD LENGTH=142
          Length = 141

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 98/115 (85%)

Query: 23  PRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGEKVIFGRRHVGIM 82
           P+L+  ++ +PK VEVE+ DG+ F+  +EFLR++SPAAD K+RS+ GEKVI GRR+VGIM
Sbjct: 21  PKLSGFSIVSPKQVEVEYADGTKFNFSSEFLRIHSPAADGKVRSIGGEKVISGRRYVGIM 80

Query: 83  SAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSNKFGLMRSYITTLKKHGLTRDP 137
           SAE VGNYGVR++FDDLH+TGI+ WDY + LGSNKFGLMR+YI TL+KH L+R+P
Sbjct: 81  SAEPVGNYGVRLVFDDLHRTGIYPWDYFYELGSNKFGLMRNYIKTLQKHNLSREP 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,722,988
Number of extensions: 103173
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 106 (45.4 bits)